Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.1e-187 659.1 339 100.0
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.1e-187 659.1 339 100.0
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.4e-159 565.8 351 85.8
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 6.9e-159 564.3 351 84.6
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 9.3e-156 553.9 339 85.5
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.3e-151 538.1 351 80.6
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.5e-148 528.1 383 74.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 6.0e-147 524.6 351 78.3
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.5e-145 520.0 383 73.1
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.5e-145 519.2 384 72.4
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 4.3e-145 518.5 339 83.2
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.3e-144 516.9 349 77.9
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.1e-144 516.2 349 77.7
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.3e-143 511.5 349 76.8
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.5e-140 502.7 349 76.2
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.9e-138 495.4 351 74.9
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 5.3e-135 485.0 341 77.7
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 5.3e-135 485.0 341 77.7
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 9.0e-135 484.2 341 77.1
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-134 483.4 341 76.8
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.3e-130 469.5 357 70.6
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.3e-127 458.4 357 69.5
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-122 443.4 286 81.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-114 416.8 216 98.1
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 9.7e-113 411.0 342 64.3
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.6e-110 403.7 322 66.5
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.6e-110 403.7 342 63.7
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 6.5e-109 398.3 341 64.8
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 3.2e-108 396.0 359 62.1
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.6e-107 393.7 250 78.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.1e-107 393.3 339 64.3
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 5.2e-106 388.7 244 78.3
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.2e-105 387.5 336 61.9
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 2.6e-105 386.3 252 77.8
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.6e-105 386.3 252 77.8
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 5.7e-105 385.2 346 59.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 7.5e-105 384.8 241 79.7
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 9.8e-105 384.4 340 61.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.7e-104 383.6 338 61.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.8e-104 382.9 252 77.0
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 2.8e-104 382.9 337 62.6
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 6.3e-104 381.7 284 71.1
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 6.3e-104 381.7 348 60.3
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 6.3e-104 381.7 323 62.2
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.4e-103 380.6 362 59.1
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.4e-103 379.8 310 64.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 2.4e-103 379.8 310 64.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 2.4e-103 379.8 362 59.1
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 5.4e-103 378.6 284 70.4
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.4e-103 378.6 247 75.3
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 9.1e-103 377.9 260 73.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.2e-102 377.5 249 76.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.2e-102 377.5 238 78.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.2e-102 377.5 297 66.0
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.6e-102 377.1 345 59.7
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.0e-102 376.7 351 58.7
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.5e-102 375.9 332 60.5
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 5.0e-101 372.1 249 72.7
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 5.0e-101 372.1 234 76.9
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 8.5e-101 371.3 297 66.3
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.5e-100 370.5 239 74.5
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 1.9e-100 370.2 338 60.1
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 3.2e-100 369.4 251 73.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 3.2e-100 369.4 238 74.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 3.2e-100 369.4 244 75.4
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 3.2e-100 369.4 348 58.3
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.2e-100 369.4 317 61.5
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 4.2e-100 369.0 329 59.9
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 5.5e-100 368.6 263 71.1
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.2e-100 368.2 336 60.4
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 7.2e-100 368.2 289 64.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 7.2e-100 368.2 316 62.0
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 9.4e-100 367.9 287 66.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 9.4e-100 367.9 231 76.6
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.2e-99 367.5 231 78.4
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-99 367.5 347 57.3
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.1e-99 366.7 238 74.4
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.7e-99 366.3 231 76.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.6e-99 365.9 226 77.9
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 3.6e-99 365.9 246 72.8
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 6.1e-99 365.2 231 75.8
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-98 364.0 234 76.9
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.4e-98 364.0 250 72.4
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 5.2e-98 362.1 250 71.2
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 8.8e-98 361.3 323 59.4
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.8e-98 361.3 232 75.4
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.8e-98 361.3 232 75.4
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 8.8e-98 361.3 288 64.2
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.6e-97 359.8 244 72.1
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.7e-97 358.6 238 74.4
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 5.7e-97 358.6 282 66.0
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 7.5e-97 358.2 222 77.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.3e-96 357.5 232 74.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.7e-96 357.1 222 78.8
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.7e-96 357.1 250 70.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 2.8e-96 356.3 232 75.0
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 3.7e-96 355.9 232 74.6
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.9e-96 355.5 244 72.1
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 5.4e-95 352.1 338 57.1
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.6e-94 350.5 316 58.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 2.7e-94 349.7 223 75.3
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.5e-94 349.0 226 75.7
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 4.5e-94 349.0 225 75.1
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-93 347.4 288 61.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.9e-93 346.3 249 69.1
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 8.6e-93 344.7 234 70.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 8.0e-91 338.2 238 68.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 7.5e-89 331.6 192 84.9
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.3e-88 330.9 316 57.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.6e-85 318.5 245 65.3
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.6e-83 312.8 180 87.2
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.6e-83 312.8 228 68.0
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.0e-82 311.2 178 84.8
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 2.6e-81 306.6 179 84.9
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.5e-81 305.1 234 65.4
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 2.2e-80 303.5 230 63.9
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 6.4e-80 302.0 348 52.0
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-75 287.0 213 70.4
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 4.0e-74 282.7 223 62.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 4.0e-74 282.7 232 59.9
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.2e-74 282.3 233 59.7
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.3e-69 267.7 287 54.0
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.3e-68 263.1 294 51.0
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.1e-66 258.1 166 77.7
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-62 244.6 149 77.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 8.6e-61 238.4 147 78.9
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.8e-59 233.4 132 85.6
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.3e-52 209.9 129 76.0
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.1e-50 204.9 359 42.1
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-49 200.7 214 47.7
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.8e-49 199.1 214 47.2
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 3.2e-47 193.4 103 91.3
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 7.1e-47 192.2 341 37.8
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 7.1e-47 192.2 103 91.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 7.1e-47 192.2 103 92.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.6e-46 191.0 103 90.3
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 2.1e-46 190.7 246 46.7
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-45 187.6 103 89.3
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-45 187.2 103 89.3
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 2.3e-45 187.2 103 89.3
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 3.0e-45 186.8 102 89.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-45 186.8 102 89.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.5e-44 183.7 102 88.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.5e-44 183.7 102 88.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.1e-39 168.3 234 41.0
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.0e-37 161.8 258 37.2
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.1e-34 151.8 163 57.7
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-32 145.2 103 72.8
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 4.9e-32 142.9 91 75.8
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.2e-31 140.2 75 92.0
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.2e-31 140.2 75 92.0
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.2e-31 140.2 75 92.0
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.5e-28 130.6 118 60.2
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.8e-27 127.1 94 66.0
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.7e-27 126.7 179 45.8
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.1e-26 125.2 129 51.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 5.0e-24 116.3 192 43.2
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 2.5e-23 114.0 103 54.4
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.6e-22 111.3 104 55.8
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.0e-21 107.1 157 45.2
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 6.7e-21 105.9 56 91.1
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 9.7e-20 102.1 57 80.7
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.7e-19 100.1 63 71.4
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 4.8e-19 99.8 179 33.5
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 8.5e-16 89.0 47 93.6
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.2e-15 86.7 50 80.0
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.1e-14 84.3 44 93.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 6.7e-13 79.3 68 63.2


User provided reference genes

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