Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.1e-122 443.4 225 100.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.1e-122 443.4 225 100.0
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.2e-105 386.7 228 87.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-103 379.0 215 89.8
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-103 379.0 215 89.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.3e-95 352.1 226 84.5
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.5e-92 340.9 226 78.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.9e-90 336.3 230 76.1
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 7.8e-89 330.9 215 79.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.3e-88 329.3 231 74.9
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.0e-88 328.9 223 78.5
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.0e-88 328.9 215 79.5
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-88 328.9 215 79.5
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 8.6e-88 327.4 232 75.9
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.2e-86 323.6 230 76.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.6e-86 323.2 230 76.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.4e-85 320.1 234 73.1
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-85 319.3 231 75.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.1e-70 267.7 236 62.7
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.9e-64 248.8 232 61.2
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.9e-63 246.5 230 58.3
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.9e-60 234.2 223 61.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.1e-45 186.0 186 53.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.2e-44 184.1 198 51.5
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.9e-43 179.5 178 55.1
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.4e-43 177.9 213 48.8
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-42 177.6 212 48.1
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.9e-42 176.8 251 44.2
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.9e-42 176.8 251 44.2
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 2.5e-42 176.4 200 49.5
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.5e-42 176.4 202 50.5
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.2e-42 176.0 228 45.2
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 7.1e-42 174.9 165 56.4
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 7.1e-42 174.9 165 56.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.2e-41 174.1 171 55.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.2e-41 174.1 171 55.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.2e-41 174.1 176 53.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.5e-41 172.6 173 53.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.6e-41 172.2 195 49.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 7.9e-41 171.4 188 47.9
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 7.9e-41 171.4 188 49.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.0e-40 171.0 215 46.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.0e-40 171.0 164 51.8
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-40 170.2 165 55.2
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.8e-40 170.2 165 55.2
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.8e-40 170.2 203 48.8
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 2.3e-40 169.9 212 47.2
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.0e-40 169.5 176 49.4
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 5.1e-40 168.7 187 48.1
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 5.1e-40 168.7 171 46.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 6.7e-40 168.3 176 52.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.5e-39 166.4 214 46.7
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 3.3e-39 166.0 174 51.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.3e-39 166.0 156 54.5
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.3e-39 166.0 162 54.3
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 4.3e-39 165.6 153 51.6
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.3e-39 165.6 174 48.9
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 5.7e-39 165.2 171 53.2
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 7.4e-39 164.9 218 44.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 9.6e-39 164.5 155 51.0
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.6e-38 163.7 187 47.6
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.7e-38 162.5 163 50.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 4.8e-38 162.2 179 49.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.3e-38 161.8 207 48.3
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.2e-38 161.4 175 52.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.1e-37 161.0 175 49.1
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 5.3e-37 158.7 166 46.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.5e-36 157.1 171 49.7
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 4.5e-36 155.6 163 42.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 7.6e-36 154.8 168 50.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.0e-35 154.5 163 47.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.0e-35 154.5 192 45.8
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.7e-35 153.7 177 47.5
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.7e-35 153.7 192 45.8
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 3.8e-35 152.5 178 46.6
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 3.8e-35 152.5 178 46.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 3.8e-35 152.5 152 49.3
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.8e-35 152.5 152 49.3
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.4e-35 151.4 165 49.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 170 44.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 165 49.1
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.9e-34 150.2 157 51.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.9e-34 150.2 162 46.9
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.5e-34 149.8 172 43.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.2e-34 149.4 171 48.5
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 3.2e-34 149.4 162 43.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.2e-34 149.1 165 49.1
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.5e-34 148.7 159 49.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.5e-34 148.7 165 41.8
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 7.2e-34 148.3 153 45.1
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 9.3e-34 147.9 165 50.9
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 9.3e-34 147.9 156 50.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.1e-33 146.7 153 49.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.1e-33 146.7 186 43.0
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.1e-33 146.7 150 48.7
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.7e-33 146.4 152 46.7
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.1e-33 145.2 147 51.7
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 6.1e-33 145.2 177 42.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.3e-32 144.1 164 45.7
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.1e-31 141.0 176 41.5
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 7.4e-31 138.3 174 42.5
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 2.2e-30 136.7 205 40.0
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.8e-30 136.3 175 46.9
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.7e-30 136.0 175 46.9
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.7e-30 136.0 152 47.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.1e-29 134.4 175 45.7
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.8e-29 133.7 210 40.5
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 4.1e-29 132.5 226 39.4
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 5.3e-29 132.1 206 35.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 9.0e-29 131.3 170 43.5
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 3.4e-28 129.4 153 46.4
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.3e-27 127.5 176 39.2
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 3.8e-27 125.9 203 37.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.0e-27 125.6 160 43.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-26 124.4 185 38.9
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-26 122.9 206 37.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.2e-26 122.9 161 41.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.2e-26 122.5 166 42.8
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.2e-26 121.7 177 40.1
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 7.2e-26 121.7 164 43.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 9.4e-26 121.3 152 45.4
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 9.4e-26 121.3 188 37.8
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.2e-25 120.9 175 40.0
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 4.6e-25 119.0 154 44.2
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 6.1e-25 118.6 161 41.0
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.0e-24 117.9 188 37.2
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.8e-24 117.1 174 39.7
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 3.9e-24 115.9 154 41.6
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.5e-23 113.2 144 44.4
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 4.3e-23 112.5 177 40.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 4.3e-23 112.5 157 43.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.3e-23 112.5 157 39.5
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 5.7e-23 112.1 162 42.0
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.7e-23 112.1 118 47.5
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.7e-22 109.4 221 33.9
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.7e-22 109.4 221 33.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 4.8e-22 109.0 165 41.2
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.1e-21 107.8 153 40.5
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.4e-21 106.7 172 36.6
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.4e-21 106.7 126 47.6
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.1e-21 106.3 155 39.4
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.1e-21 105.9 126 46.8
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.9e-21 105.1 126 46.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.2e-20 104.4 162 39.5
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.5e-20 104.0 171 39.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.3e-19 100.9 151 35.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.3e-19 100.9 183 35.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 7.9e-17 91.7 151 35.8
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.7e-16 88.6 177 33.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.4e-15 85.9 150 37.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.3e-14 84.3 181 34.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.3e-14 82.0 163 34.4
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-13 81.3 64 60.9
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.8e-13 80.5 81 46.9
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.1e-13 79.7 105 41.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.1e-13 79.7 103 37.9
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.2e-12 77.8 150 30.7
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.5e-12 75.9 199 30.2
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.8e-11 72.8 168 31.0
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-10 71.2 75 53.3
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.1e-09 67.0 101 35.6
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.8e-08 63.9 87 40.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 8.8e-08 61.6 78 42.3
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.4e-07 59.3 73 38.4
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 1.7e-06 57.4 119 33.6


User provided reference genes

Program Settings