Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.7e-113 411.0 217 100.0
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.7e-113 411.0 217 100.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.4e-111 405.6 217 98.6
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 5.3e-111 404.4 217 98.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.0e-110 402.5 217 98.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-109 400.2 217 98.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 8.0e-107 390.6 217 94.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-106 390.2 219 94.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 9.8e-105 383.6 217 92.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 5.4e-103 377.9 220 91.8
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 7.7e-102 374.0 217 90.3
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-101 373.6 220 90.9
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-101 372.5 220 91.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-101 372.5 220 91.8
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.2e-101 372.5 220 91.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.5e-100 369.0 217 88.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.7e-97 357.8 211 91.5
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.2e-96 355.9 198 89.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.9e-82 307.4 227 74.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-79 300.4 181 91.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.7e-78 295.8 209 80.4
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 7.8e-78 294.3 177 88.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.9e-77 292.0 228 70.6
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.2e-75 284.6 217 71.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.8e-74 283.1 222 68.5
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.0e-73 279.6 233 64.8
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.0e-73 279.6 220 66.8
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 9.8e-73 277.3 232 65.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.3e-72 276.9 207 70.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.7e-72 276.6 233 63.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.7e-72 276.6 231 64.5
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.7e-72 276.6 212 69.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.7e-72 276.6 208 69.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.2e-72 276.2 230 67.0
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.2e-72 276.2 231 65.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.7e-72 275.4 225 64.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.2e-71 272.3 216 67.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.2e-71 272.3 216 67.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.2e-71 272.3 208 68.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.2e-71 272.3 208 68.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 3.2e-71 272.3 197 72.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.2e-71 270.8 208 67.8
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 9.2e-71 270.8 207 68.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.2e-70 270.4 207 68.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.5e-70 268.9 225 65.3
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 3.5e-70 268.9 206 68.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.6e-70 268.5 207 68.1
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-70 268.5 238 62.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-70 268.5 238 62.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.6e-70 268.5 212 66.5
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 202 70.3
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 6.0e-70 268.1 207 67.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.0e-70 268.1 214 65.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-69 267.3 211 66.8
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.0e-69 267.3 209 67.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-69 267.3 238 61.8
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-69 266.9 208 67.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.3e-69 266.9 206 67.0
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-69 266.9 202 69.8
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-69 266.9 207 66.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.7e-69 266.5 238 61.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.7e-69 266.5 238 61.8
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-69 266.2 238 61.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-69 266.2 238 61.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.3e-69 266.2 206 68.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.3e-69 266.2 210 66.7
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 3.0e-69 265.8 220 64.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.0e-69 265.8 233 65.2
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.9e-69 265.4 202 68.8
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.1e-69 265.0 202 68.3
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.1e-69 265.0 211 65.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.1e-69 265.0 206 68.0
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.1e-69 265.0 223 63.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 6.6e-69 264.6 238 61.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 6.6e-69 264.6 210 66.2
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.6e-69 264.2 211 66.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 8.6e-69 264.2 227 60.8
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.1e-68 263.8 194 70.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.5e-68 263.5 214 64.5
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.5e-68 263.5 203 66.5
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.5e-68 262.7 237 64.1
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.5e-68 262.7 213 65.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.5e-68 262.7 198 70.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 3.3e-68 262.3 202 67.3
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.3e-68 262.3 234 62.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.3e-68 262.3 198 69.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.3e-68 261.9 232 62.9
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.6e-68 261.5 221 63.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.3e-68 261.2 208 65.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 9.5e-68 260.8 221 62.4
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 9.5e-68 260.8 231 61.9
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.6e-67 260.0 205 66.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.1e-67 259.6 224 61.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.8e-67 259.2 213 63.8
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.6e-67 258.8 209 65.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 4.7e-67 258.5 239 61.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 4.7e-67 258.5 207 65.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.2e-67 258.1 234 60.7
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.1e-66 257.3 215 65.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.4e-66 256.9 212 63.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.8e-66 256.5 195 67.7
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.8e-66 256.5 233 61.8
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.1e-66 255.8 210 64.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.1e-66 255.8 210 62.4
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.8e-66 254.6 228 62.3
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 8.9e-66 254.2 202 65.3
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.4e-65 251.9 219 64.8
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.6e-65 251.1 234 59.4
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 9.9e-65 250.8 219 64.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.2e-64 249.6 197 66.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.1e-63 245.4 199 66.8
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.2e-62 243.8 215 59.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.2e-62 243.8 223 60.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.6e-62 243.4 235 57.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.7e-62 242.7 225 58.2
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.5e-62 242.3 194 63.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.8e-62 241.1 210 60.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.1e-60 237.3 194 60.3
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 2.5e-60 236.1 192 60.9
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.5e-60 236.1 226 56.2
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.6e-59 233.4 228 61.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.8e-59 232.6 201 61.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 6.2e-59 231.5 228 61.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.9e-56 221.9 197 60.4
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 6.4e-56 221.5 193 62.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.1e-51 206.5 148 70.3
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.8e-51 205.3 204 53.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.9e-47 193.4 171 57.3
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.3e-45 187.2 225 52.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.9e-44 183.3 220 50.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 3.8e-40 169.1 125 68.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.6e-38 163.7 126 65.1
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.8e-35 152.9 217 45.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.8e-35 152.1 197 48.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 8.1e-35 151.4 102 71.6
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.1e-34 149.4 114 65.8
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 6.9e-34 148.3 127 62.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.7e-32 143.7 101 69.3
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.0e-13 81.3 90 55.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 5.7e-12 75.5 62 59.7


User provided reference genes

Program Settings