Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.3e-126 456.4 232 100.0
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 9.1e-125 450.3 232 98.7
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 7.2e-122 440.7 232 96.6
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 1.2e-103 380.2 198 97.5
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 4.5e-100 368.2 198 96.0
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.0e-87 326.2 198 85.9
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 2.9e-86 322.4 198 85.4
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 6.4e-86 321.2 198 84.8
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 2.0e-84 316.2 198 84.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 2.7e-84 315.8 198 83.3
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.3e-83 313.5 198 82.8
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 3.9e-83 312.0 198 82.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.7e-78 296.6 198 79.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.3e-67 260.4 198 71.7
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 9.5e-66 254.2 200 69.5
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 8.1e-65 251.1 201 70.1
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.2e-62 243.0 200 67.5
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 2.7e-52 209.5 176 64.2
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 4.8e-49 198.7 135 80.7
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.4e-45 187.2 214 50.5
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 2.0e-39 166.8 195 51.3
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 1.7e-38 163.7 122 63.1
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 6.4e-38 161.8 190 52.1
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 8.4e-38 161.4 199 46.2
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 8.4e-38 161.4 130 61.5
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.1e-37 161.0 116 67.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.9e-37 160.2 166 48.8
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 2.4e-37 159.8 196 47.4
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.2e-37 159.5 192 48.4
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 9.3e-37 157.9 194 49.5
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 9.3e-37 157.9 98 72.4
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 9.3e-37 157.9 199 47.2
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.2e-36 157.5 198 50.0
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.6e-36 157.1 95 73.7
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 2.1e-36 156.8 127 63.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.7e-36 156.4 124 62.9
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.7e-36 156.4 194 46.9
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.5e-36 156.0 201 47.3
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 4.6e-36 155.6 205 46.8
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 6.0e-36 155.2 124 62.1
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 7.9e-36 154.8 126 61.9
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.0e-35 154.5 122 62.3
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.0e-35 154.5 126 62.7
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.3e-35 154.1 127 61.4
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.3e-35 154.1 115 62.6
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.8e-35 153.7 98 73.5
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.8e-35 153.7 142 54.2
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.0e-35 152.9 207 45.4
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.0e-35 152.9 128 60.2
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 3.0e-35 152.9 185 48.6
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 3.9e-35 152.5 198 48.5
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 3.9e-35 152.5 193 46.6
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 5.1e-35 152.1 124 62.1
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 5.1e-35 152.1 188 48.4
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.1e-35 152.1 133 60.2
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 5.1e-35 152.1 197 45.2
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 5.1e-35 152.1 228 41.7
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 6.7e-35 151.8 189 46.0
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 6.7e-35 151.8 188 48.4
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 6.7e-35 151.8 123 58.5
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 8.7e-35 151.4 127 59.1
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 8.7e-35 151.4 199 46.2
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.1e-34 151.0 199 45.2
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.5e-34 150.6 130 57.7
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.5e-34 150.6 94 69.1
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.9e-34 150.2 188 44.1
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.9e-34 150.2 126 57.1
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.5e-34 149.8 188 45.7
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.5e-34 149.8 196 46.9
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 2.5e-34 149.8 207 45.4
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 2.5e-34 149.8 188 45.7
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.3e-34 149.4 204 48.5
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.3e-34 149.4 127 59.8
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 3.3e-34 149.4 197 46.2
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 3.3e-34 149.4 192 46.9
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.6e-34 148.7 125 57.6
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 7.4e-34 148.3 147 51.0
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 7.4e-34 148.3 199 45.2
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 7.4e-34 148.3 194 44.8
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 9.6e-34 147.9 126 56.3
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 9.6e-34 147.9 197 45.7
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.3e-33 147.5 193 46.1
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 2.1e-33 146.7 205 44.9
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 2.1e-33 146.7 199 43.7
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 2.1e-33 146.7 125 60.0
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.8e-33 146.4 99 67.7
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.8e-33 146.4 130 56.9
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 3.7e-33 146.0 124 60.5
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 6.2e-33 145.2 198 47.5
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 8.2e-33 144.8 82 80.5
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 8.2e-33 144.8 199 43.7
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.1e-32 144.4 94 70.2
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 2.4e-32 143.3 164 48.8
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 9.0e-32 141.4 193 40.4
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 1.5e-31 140.6 132 55.3
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.5e-31 140.6 113 58.4
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.5e-31 140.6 124 55.6
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.5e-31 140.6 124 55.6
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.5e-31 140.6 124 55.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 2.6e-31 139.8 132 55.3
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 3.4e-31 139.4 189 45.0
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.3e-30 137.5 205 41.0
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.2e-30 136.7 187 44.4
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.1e-29 134.4 103 56.3
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-29 134.4 103 56.3
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-29 134.4 103 56.3
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.9e-29 133.7 103 57.3
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.5e-29 133.3 103 56.3
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 2.5e-29 133.3 125 53.6
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.1e-29 131.7 103 55.3
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 7.1e-29 131.7 201 42.3
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.6e-28 130.6 98 59.2
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.8e-27 127.1 138 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.5e-26 123.2 87 59.8
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 4.3e-26 122.5 132 49.2
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 2.8e-25 119.8 77 66.2
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 4.8e-25 119.0 140 46.4
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.8e-24 117.1 121 49.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 5.0e-22 109.0 79 58.2
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.6e-20 104.0 110 45.5
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.7e-19 98.6 96 53.1
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 6.7e-19 98.6 111 44.1
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 8.8e-19 98.2 70 61.4
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.4e-18 95.1 94 53.2
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 5.3e-16 89.0 80 48.8
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 2.2e-14 83.6 156 37.2
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 3.8e-14 82.8 90 43.3
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 4.2e-13 79.3 107 45.8
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-12 77.8 95 50.5
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.6e-12 77.4 96 43.8
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 5.7e-10 68.9 73 41.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 7.4e-10 68.6 78 39.7
vmacro10504 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 2.8e-09 66.6 94 38.3
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.3e-09 65.5 126 36.5
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.8e-08 63.9 81 42.0
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.1e-08 63.2 69 52.2
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 5.9e-07 58.9 63 39.7
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 7.7e-07 58.5 63 39.7
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 1.0e-06 58.2 64 39.1
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 1.3e-06 57.8 53 45.3
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 1.7e-06 57.4 60 38.3
Cc11_g10940 Coffea canephora HOM05D002826 ORTHO05D003105 2.9e-06 56.6 61 39.3
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 2.9e-06 56.6 90 28.9
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 3.8e-06 56.2 60 38.3
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 3.8e-06 56.2 60 38.3
HanXRQChr11g0335291 Helianthus annuus HOM05D002826 ORTHO05D003105 5.0e-06 55.8 64 37.5
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.0e-06 55.8 103 36.9
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 6.5e-06 55.5 60 38.3
ATR0743G230 Amborella trichopoda HOM05D002826 ORTHO05D003105 8.5e-06 55.1 50 40.0
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 8.5e-06 55.1 112 31.2
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 8.5e-06 55.1 50 40.0
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 8.5e-06 55.1 50 40.0
Peaxi162Scf00198g00412 Petunia axillaris HOM05D002826 ORTHO05D003105 8.5e-06 55.1 92 29.3
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 8.5e-06 55.1 50 40.0


User provided reference genes

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