Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.2e-152 543.1 279 100.0
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 6.0e-131 471.1 279 90.0
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 5.6e-129 464.5 256 94.9
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.9e-121 439.5 320 79.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 4.7e-120 434.9 278 86.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 5.2e-119 431.4 278 86.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 4.9e-117 424.9 303 80.2
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 6.9e-111 404.4 240 88.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.0e-106 389.0 281 77.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.1e-96 356.3 264 78.4
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 8.1e-96 354.4 284 72.5
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 5.8e-94 348.2 253 78.3
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.7e-93 346.7 273 73.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.5e-92 342.8 256 77.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 7.1e-92 341.3 285 70.2
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.6e-91 340.1 277 72.9
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 6.3e-88 328.2 256 75.4
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.7e-85 320.1 279 65.9
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 5.0e-77 292.0 226 72.1
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.2e-75 287.3 189 76.2
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 3.6e-75 285.8 206 72.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 7.9e-75 284.6 256 62.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.4e-74 283.9 276 58.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.1e-73 280.8 183 75.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.1e-73 280.8 183 75.4
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.0e-73 280.0 276 56.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.4e-73 278.9 249 59.4
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 4.4e-73 278.9 196 70.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 9.7e-73 277.7 280 56.4
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.7e-72 276.9 266 56.4
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.8e-72 276.2 188 73.4
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.8e-72 276.2 305 52.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.7e-72 275.8 200 70.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 6.3e-72 275.0 188 74.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 8.2e-72 274.6 197 70.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.1e-71 274.2 305 52.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.1e-71 274.2 254 59.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.4e-71 273.9 217 65.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.4e-71 273.9 194 70.1
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.4e-71 273.9 189 73.5
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.4e-71 273.9 188 71.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.1e-71 272.7 250 58.8
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 4.1e-71 272.3 255 56.9
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 5.3e-71 271.9 190 71.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 6.9e-71 271.6 284 55.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 9.1e-71 271.2 252 59.1
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 9.1e-71 271.2 252 59.1
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 9.1e-71 271.2 252 59.1
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 9.1e-71 271.2 189 72.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.2e-70 270.8 195 67.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.5e-70 270.4 188 72.3
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.5e-70 270.4 198 68.7
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.6e-70 269.6 265 58.5
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.6e-70 269.6 301 52.5
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 3.4e-70 269.2 187 72.2
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 3.4e-70 269.2 187 71.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 5.9e-70 268.5 210 67.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 7.7e-70 268.1 175 78.3
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 7.7e-70 268.1 187 71.7
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.0e-69 267.7 190 72.1
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.3e-69 267.3 191 68.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.3e-69 267.3 191 68.6
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-69 267.3 186 68.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.7e-69 266.9 190 71.1
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.7e-69 266.9 206 67.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.9e-69 266.2 269 56.1
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.8e-69 265.8 283 54.4
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.0e-69 265.4 273 54.9
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 5.0e-69 265.4 265 57.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 8.5e-69 264.6 218 62.4
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.1e-68 264.2 197 68.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.4e-68 263.8 177 72.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.9e-68 263.5 192 72.9
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 5.5e-68 261.9 169 75.1
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.5e-68 261.9 171 75.4
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 5.5e-68 261.9 190 68.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 5.5e-68 261.9 197 66.5
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 5.5e-68 261.9 266 55.6
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.2e-67 260.8 186 67.7
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.2e-67 260.8 272 56.6
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.6e-67 260.4 280 53.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.6e-67 260.4 173 73.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.1e-67 260.0 187 70.1
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 2.1e-67 260.0 175 72.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.7e-67 259.6 272 56.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 6.1e-67 258.5 190 70.5
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.8e-66 256.9 193 72.0
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.8e-66 256.9 207 63.8
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 3.9e-66 255.8 295 51.5
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 5.2e-66 255.4 184 67.9
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.7e-66 255.0 190 70.0
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.7e-66 255.0 207 63.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 2.0e-65 253.4 187 72.7
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.6e-65 253.1 192 67.7
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.6e-65 253.1 188 68.1
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.7e-64 250.4 175 72.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 3.7e-64 249.2 186 67.7
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 6.3e-64 248.4 215 62.3
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 8.2e-64 248.1 226 59.3
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-63 247.7 214 72.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.8e-63 246.9 212 60.4
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.3e-63 245.4 187 64.2
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 5.9e-62 241.9 247 53.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.9e-62 241.9 187 63.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.9e-62 241.9 187 63.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.9e-62 241.9 187 63.6
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.9e-62 241.9 187 66.8
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.8e-61 239.2 193 65.8
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.1e-60 237.7 240 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.9e-60 236.9 178 66.3
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 7.2e-60 235.0 188 61.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.2e-59 234.2 161 69.6
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 5.2e-58 228.8 189 62.4
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.7e-58 228.4 211 56.4
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 8.8e-58 228.0 162 70.4
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 7.5e-57 224.9 170 64.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.4e-55 220.7 192 57.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 5.5e-52 208.8 176 59.1
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.4e-49 199.5 137 68.6
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 8.3e-48 194.9 140 70.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.4e-47 194.1 134 73.9
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.2e-46 191.0 187 54.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 9.5e-44 181.4 135 65.9
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.0e-42 176.0 110 74.5
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.4e-39 166.8 119 68.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 8.0e-35 151.8 94 78.7
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.5e-28 131.0 93 65.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-28 130.6 188 43.6
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 8.0e-27 125.2 134 47.0
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 3.7e-24 116.3 138 42.0
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 2.4e-23 113.6 161 36.0
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.1e-23 112.8 182 42.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.3e-21 107.1 104 54.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.1e-18 98.2 78 62.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-18 96.7 106 51.9
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-18 96.7 106 51.9
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.4e-17 93.2 90 55.6
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 2.5e-12 77.0 113 45.1
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.4e-10 70.5 41 78.0
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.8e-08 63.2 38 78.9
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-07 61.6 125 40.0
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.2e-07 60.1 56 62.5


User provided reference genes

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