Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 8.4e-289 996.5 575 100.0
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.1e-287 991.9 575 99.5
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-280 969.5 575 95.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-280 969.1 575 95.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.0e-278 963.0 575 94.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.0e-234 815.8 574 80.5
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.4e-222 776.5 570 79.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.4e-214 750.0 575 74.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.5e-208 729.2 575 70.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 9.6e-200 700.7 574 67.8
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.8e-199 699.1 574 68.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 4.4e-197 691.8 565 70.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 2.1e-194 682.9 574 65.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.0e-193 680.6 575 64.3
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.8e-191 672.5 574 63.8
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.7e-188 663.3 575 67.8
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 9.0e-182 641.0 577 61.2
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.9e-177 625.5 565 65.5
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 9.0e-166 587.8 545 56.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.0e-129 466.1 579 46.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 3.4e-128 463.0 545 47.3
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.7e-124 450.7 555 44.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 8.8e-121 438.3 559 44.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.3e-119 434.5 572 43.5
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-119 434.1 578 44.5
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 6.3e-119 432.2 577 43.8
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.1e-118 429.9 545 45.1
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.3e-116 423.7 577 42.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.3e-116 423.7 574 44.3
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.3e-116 423.7 574 43.2
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.9e-116 423.3 547 45.3
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.6e-115 419.1 539 44.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-114 417.5 561 42.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-114 417.5 561 42.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-112 411.4 574 43.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.3e-111 407.9 580 42.1
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.2e-111 407.1 583 41.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.4e-111 405.6 579 40.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.4e-110 404.4 537 42.1
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.1e-110 402.9 578 41.3
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.2e-109 401.4 597 41.2
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-109 401.4 573 42.9
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.9e-108 396.4 551 42.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.5e-107 394.4 545 42.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.5e-107 393.7 584 41.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.3e-107 393.3 566 41.3
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 5.6e-107 392.5 556 41.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.5e-107 391.7 579 41.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.6e-106 391.0 556 41.5
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.2e-106 389.0 588 41.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 8.0e-106 388.7 553 42.9
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 4.0e-105 386.3 571 41.0
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 6.8e-105 385.6 645 38.4
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 8.9e-105 385.2 554 39.4
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.9e-105 385.2 573 42.2
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.5e-104 384.4 579 39.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 8.3e-103 378.6 552 40.8
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.1e-102 378.3 536 39.9
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 9.2e-102 375.2 580 40.5
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.5e-101 373.2 575 40.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.0e-101 372.5 575 39.1
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-100 371.7 553 39.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.3e-100 371.3 563 39.3
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-100 371.3 545 40.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-100 370.9 559 39.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.0e-100 369.4 545 40.7
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.6e-100 369.0 578 40.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.1e-99 368.2 578 38.9
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-99 367.9 563 39.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.5e-99 367.9 554 40.3
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 9.5e-99 365.2 554 40.3
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 3.6e-98 363.2 563 38.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 6.2e-98 362.5 572 39.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-97 361.3 521 39.2
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.4e-97 361.3 583 38.6
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.8e-97 360.9 574 42.3
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.1e-97 360.1 571 37.5
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 4.0e-97 359.8 571 37.1
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.9e-97 358.6 546 37.5
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.5e-96 357.8 582 37.1
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.8e-96 355.9 567 37.6
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.2e-95 354.0 459 44.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.7e-95 353.2 577 36.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.9e-95 352.8 547 37.5
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.4e-94 351.3 462 43.1
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.4e-94 350.5 581 37.2
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 6.0e-93 345.9 558 36.2
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.0e-92 345.1 538 41.3
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.9e-92 343.2 561 38.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.6e-92 342.4 582 37.1
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.6e-92 342.4 471 43.5
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-91 341.3 580 36.9
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.9e-91 340.9 564 37.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.5e-91 340.5 576 40.6
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-90 338.2 582 37.3
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-90 338.2 580 36.0
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.6e-90 336.7 582 37.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.4e-89 334.7 586 36.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-85 320.5 567 35.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 4.6e-85 319.7 563 35.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.0e-84 317.0 534 37.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 5.1e-84 316.2 576 35.1
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 3.3e-83 313.5 593 35.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 7.3e-83 312.4 541 36.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.6e-82 311.2 575 35.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.8e-82 310.5 555 36.0
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 3.6e-82 310.1 377 47.2
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 8.1e-82 308.9 575 35.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.1e-81 307.0 473 39.5
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 5.2e-81 306.2 569 34.4
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 6.8e-81 305.8 575 35.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 4.4e-80 303.1 502 36.3
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.8e-80 302.8 607 35.6
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.2e-79 300.8 481 38.9
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.9e-79 299.7 578 33.6
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 8.4e-79 298.9 596 34.9
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.6e-77 294.7 389 44.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.6e-77 294.7 464 40.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.0e-77 292.7 425 42.1
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.0e-73 280.0 465 38.7
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.2e-71 274.2 580 31.6
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.4e-71 272.7 583 32.6
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.7e-68 262.3 364 42.3
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 3.8e-63 246.9 164 78.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.8e-58 229.9 457 34.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-55 221.9 389 34.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.5e-53 213.8 561 29.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 4.3e-51 206.8 266 41.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-46 192.2 257 39.3
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.1e-44 183.3 553 28.9
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.2e-42 177.9 358 32.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 9.1e-41 172.6 406 33.7
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.2e-39 167.9 328 33.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-39 167.5 236 42.8
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.5e-39 166.4 255 43.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.0e-36 159.1 466 28.1
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-33 147.5 248 33.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.2e-31 141.4 508 25.2
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 4.4e-27 127.1 450 25.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.7e-26 125.2 249 30.1
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.5e-23 113.2 164 42.1
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.5e-23 112.8 131 45.0
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 1.9e-22 111.7 415 23.1
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.5e-22 111.3 428 23.1
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.2e-22 109.8 146 41.8
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.6e-21 108.6 556 21.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.1e-21 106.7 271 33.2
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.1e-21 106.7 179 38.5
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.0e-19 101.7 86 61.6
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.0e-19 101.7 154 34.4
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.0e-16 91.7 74 58.1
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.7e-16 91.3 153 35.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.5e-16 90.5 123 45.5
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.9e-16 90.1 153 35.3
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.2e-14 84.3 175 32.6
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 4.2e-14 84.0 162 46.9
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.7e-13 81.3 165 32.7
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.0e-12 79.3 126 38.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.8e-12 76.6 122 45.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.2e-11 75.9 124 34.7
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-11 75.5 175 31.4
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.8e-10 71.2 130 32.3
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.1e-09 69.3 68 47.1
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.8e-09 68.6 215 24.2
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-07 62.8 140 26.4
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.3e-07 62.4 212 24.1
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.3e-07 61.6 131 38.2
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-06 58.2 117 29.9
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-06 57.8 46 54.3
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 3.2e-06 57.8 84 33.3
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 5.5e-06 57.0 80 38.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.5e-06 57.0 46 54.3


User provided reference genes

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