Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p47550 Brassica napus HOM05D005044 ORTHO05D006799 1.2e-64 249.6 119 100.0
BraA09t40212Z Brassica rapa HOM05D005044 ORTHO05D006799 5.4e-57 224.2 115 92.2
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 5.3e-28 127.9 69 85.5
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 3.4e-27 125.2 76 75.0
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 8.4e-26 120.6 78 69.2
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 3.2e-25 118.6 69 78.3
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 3.2e-25 118.6 69 78.3
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 3.2e-25 118.6 69 78.3
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 3.2e-25 118.6 69 78.3
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 4.2e-25 118.2 69 78.3
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 9.3e-25 117.1 69 76.8
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 2.7e-24 115.5 69 75.4
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 3.5e-24 115.2 69 75.4
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 4.6e-24 114.8 69 75.4
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 4.6e-24 114.8 69 75.4
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 1.0e-23 113.6 69 75.4
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 5.1e-23 111.3 69 72.5
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 8.7e-23 110.5 69 73.9
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 8.7e-23 110.5 69 73.9
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 4.8e-21 104.8 70 67.1
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 1.1e-20 103.6 76 60.5
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 1.1e-20 103.6 76 60.5
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 1.8e-20 102.8 76 60.5
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.4e-20 102.4 97 51.5
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 2.4e-20 102.4 71 62.0
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 6.9e-20 100.9 69 68.1
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 6.9e-20 100.9 76 57.9
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 9.0e-20 100.5 76 59.2
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 1.5e-19 99.8 69 63.8
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 2.6e-19 99.0 69 63.8
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 2.6e-19 99.0 72 62.5
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 2.6e-19 99.0 76 57.9
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.4e-19 98.6 74 58.1
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 4.5e-19 98.2 69 63.8
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 4.5e-19 98.2 70 62.9
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 5.9e-19 97.8 69 62.3
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 5.9e-19 97.8 69 62.3
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 5.9e-19 97.8 69 62.3
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 5.9e-19 97.8 69 62.3
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 1.0e-18 97.1 76 55.3
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 1.0e-18 97.1 69 60.9
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 1.3e-18 96.7 69 62.3
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 1.7e-18 96.3 69 59.4
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 2.2e-18 95.9 65 63.1
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 2.2e-18 95.9 80 56.2
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 2.9e-18 95.5 68 61.8
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 2.9e-18 95.5 69 58.0
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 5.0e-18 94.7 69 60.9
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 5.0e-18 94.7 69 59.4
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 5.0e-18 94.7 77 54.5
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 6.5e-18 94.4 69 59.4
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 6.5e-18 94.4 78 51.3
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 8.5e-18 94.0 69 59.4
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.1e-17 93.6 69 60.9
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 1.4e-17 93.2 69 59.4
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 1.4e-17 93.2 69 60.9
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 1.9e-17 92.8 69 60.9
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 3.2e-17 92.0 69 59.4
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 4.2e-17 91.7 78 51.3
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.2e-17 91.7 78 51.3
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.2e-17 91.7 78 51.3
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 4.2e-17 91.7 89 48.3
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 5.5e-17 91.3 80 53.8
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 5.5e-17 91.3 80 53.8
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 5.5e-17 91.3 69 58.0
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 5.5e-17 91.3 69 58.0
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 5.5e-17 91.3 67 58.2
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 5.5e-17 91.3 69 59.4
Oeu018178.1 Olea europaea HOM05D005044 ORTHO05D006799 7.2e-17 90.9 76 55.3
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 9.4e-17 90.5 93 46.2
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 9.4e-17 90.5 68 60.3
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.2e-16 90.1 78 50.0
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 1.2e-16 90.1 69 55.1
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 1.6e-16 89.7 69 58.0
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 2.1e-16 89.4 69 56.5
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 2.7e-16 89.0 69 56.5
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.7e-16 89.0 78 51.3
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 3.6e-16 88.6 80 52.5
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 3.6e-16 88.6 65 55.4
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 3.6e-16 88.6 65 55.4
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 4.6e-16 88.2 69 58.0
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 6.1e-16 87.8 89 44.9
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 6.1e-16 87.8 78 50.0
unitig_22.g5954 Utricularia gibba HOM05D005044 ORTHO05D006799 6.1e-16 87.8 76 55.3
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 7.9e-16 87.4 90 45.6
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 1.0e-15 87.0 69 58.0
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 1.0e-15 87.0 69 53.6
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 1.4e-15 86.7 69 55.1
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.8e-15 86.3 69 60.9
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 1.8e-15 86.3 76 53.9
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 3.0e-15 85.5 80 48.8
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 5.1e-15 84.7 68 52.9
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 6.7e-15 84.3 65 56.9
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 8.8e-15 84.0 69 56.5
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 1.5e-14 83.2 69 50.7
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 2.0e-14 82.8 69 55.1
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.5e-14 82.4 69 52.2
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 2.5e-14 82.4 76 48.7
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 4.3e-14 81.6 65 53.8
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 5.7e-14 81.3 65 53.8
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 9.7e-14 80.5 69 50.7
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 2.2e-13 79.3 75 49.3
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 3.7e-13 78.6 69 49.3
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 6.3e-13 77.8 76 44.7
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 8.2e-13 77.4 69 49.3
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 1.1e-12 77.0 69 49.3
vmacro14878 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.4e-12 76.6 150 31.3
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 5.3e-12 74.7 110 36.4
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 1.5e-11 73.2 80 45.0
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 3.4e-11 72.0 69 49.3
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 5.0e-10 68.2 69 44.9
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 2.3e-07 59.3 31 77.4
Sabra02G0036800 Salix brachista HOM05D005044 ORTHO05D006799 8.8e-07 57.4 30 76.7
Nitab4.5_0000393g0090 Nicotiana tabacum HOM05D005044 ORTHO05D020187 1.5e-06 56.6 29 79.3
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 2.6e-06 55.8 77 37.7


User provided reference genes

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