Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.5e-147 525.4 260 100.0
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 2.2e-135 485.7 285 88.1
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 9.6e-99 364.0 252 77.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.6e-98 363.2 252 77.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.8e-98 361.7 252 77.0
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 6.9e-89 331.3 304 61.2
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 2.6e-88 329.3 305 60.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.6e-88 329.3 304 60.9
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 5.8e-88 328.2 304 60.9
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 9.9e-88 327.4 304 60.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 9.9e-88 327.4 304 60.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 9.9e-88 327.4 308 59.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.8e-87 325.5 220 78.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.1e-69 265.0 300 54.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.5e-67 260.4 300 54.0
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.8e-66 255.4 308 51.0
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.2e-64 250.8 304 53.0
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.7e-63 246.9 299 53.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.9e-63 246.1 303 52.1
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.0e-55 221.1 304 48.7
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-49 200.7 269 48.3
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.8e-47 192.6 305 44.9
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.5e-46 190.7 308 43.5
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 2.5e-46 189.9 296 44.9
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.7e-45 186.4 301 43.9
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.7e-45 186.4 304 42.4
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.6e-45 186.0 305 43.9
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 8.0e-45 184.9 312 43.3
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-44 184.1 292 44.5
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.0e-44 183.0 304 42.8
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.0e-44 183.0 305 43.6
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 4.0e-44 182.6 303 44.2
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.0e-44 182.6 292 44.2
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.2e-44 182.2 302 43.4
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 6.7e-44 181.8 302 43.4
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.7e-44 181.8 292 43.8
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 8.8e-44 181.4 302 43.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 8.8e-44 181.4 299 41.8
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.5e-43 180.6 300 45.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.5e-43 180.6 301 42.5
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.0e-43 180.3 307 43.0
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 3.3e-43 179.5 303 43.6
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.4e-43 179.1 302 42.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.7e-43 178.7 304 43.4
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 9.7e-43 177.9 306 43.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.3e-42 177.6 300 43.3
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.3e-42 177.6 309 43.7
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.3e-42 177.6 307 42.7
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-42 177.2 100 89.0
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.2e-42 176.8 310 41.3
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.7e-42 176.0 304 41.1
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.8e-42 175.6 306 43.5
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-41 174.1 304 41.4
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.4e-41 174.1 299 43.1
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.4e-41 174.1 304 43.4
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.4e-41 173.3 303 38.9
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.4e-41 173.3 309 41.7
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.1e-41 172.9 315 41.0
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 4.1e-41 172.6 294 43.5
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.3e-41 172.2 302 41.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 5.3e-41 172.2 302 41.1
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 5.3e-41 172.2 305 41.6
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 5.3e-41 172.2 304 41.8
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.2e-40 171.0 290 41.4
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.6e-40 170.6 300 41.7
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 2.0e-40 170.2 295 44.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.0e-40 170.2 313 40.6
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.7e-40 169.9 305 42.0
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.7e-40 169.9 301 39.2
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.9e-40 168.7 299 41.8
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 5.9e-40 168.7 318 40.3
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 5.9e-40 168.7 331 40.5
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 5.9e-40 168.7 331 40.5
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.9e-40 168.7 320 41.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 7.7e-40 168.3 305 41.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.0e-39 167.9 318 41.8
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.2e-39 166.8 303 42.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.2e-39 166.8 322 41.6
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 8.5e-39 164.9 306 38.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.5e-38 163.3 312 40.4
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 5.5e-38 162.2 304 37.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.5e-38 162.2 302 39.4
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 9.4e-38 161.4 305 38.7
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 9.4e-38 161.4 308 41.6
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.6e-37 160.6 317 41.0
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.7e-37 159.8 306 38.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.6e-37 159.5 297 41.8
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 4.7e-37 159.1 314 39.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 4.7e-37 159.1 301 40.5
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 6.1e-37 158.7 311 39.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.0e-37 158.3 301 39.9
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 5.2e-36 155.6 311 41.8
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.4e-35 152.5 178 53.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.3e-34 151.0 178 53.4
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.3e-34 151.0 297 38.4
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.8e-34 149.1 312 39.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-34 149.1 324 38.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 8.3e-34 148.3 167 52.1
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 8.3e-34 148.3 250 41.6
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.4e-33 146.7 319 37.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 7.0e-33 145.2 271 40.6
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.6e-32 144.1 310 38.4
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.6e-32 144.1 307 39.1
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.0e-32 143.7 290 42.1
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.0e-32 143.7 229 40.6
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.7e-32 143.3 289 40.8
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.0e-31 141.4 256 43.8
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.7e-31 140.6 284 39.8
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 3.8e-31 139.4 303 35.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.0e-31 139.0 233 44.2
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-30 137.5 292 37.3
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.2e-30 136.0 314 36.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 9.5e-30 134.8 329 35.9
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.2e-29 134.4 309 38.8
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 8.0e-29 131.7 205 42.0
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 8.0e-29 131.7 293 36.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.3e-28 130.2 209 41.1
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.2e-27 127.9 299 35.5
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.5e-27 127.5 301 35.2
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.6e-27 126.7 301 35.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 3.7e-26 122.9 217 41.5
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.7e-26 122.9 304 35.9
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.1e-25 119.8 193 42.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.0e-23 114.8 312 33.3
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 1.7e-23 114.0 75 77.3
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 1.7e-23 114.0 67 85.1
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 1.7e-23 114.0 67 85.1
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.1e-22 111.3 178 44.4
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 2.5e-22 110.2 281 35.2
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.6e-21 107.5 204 35.3
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 8.0e-21 105.1 259 35.9
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 6.8e-20 102.1 300 34.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.4e-19 99.8 116 48.3
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 7.5e-19 98.6 253 39.1
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.2e-17 93.2 116 45.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 7.0e-17 92.0 115 46.1
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.6e-16 89.4 175 36.0
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 6.0e-16 89.0 207 32.9
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 6.0e-16 89.0 130 42.3
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 7.8e-16 88.6 175 36.0
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 7.8e-16 88.6 185 35.7
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.0e-15 86.7 184 37.0
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-14 84.0 147 39.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-14 83.6 104 48.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 9.5e-14 81.6 159 34.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 2.8e-13 80.1 158 35.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-11 74.7 70 55.7
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 8.3e-10 68.6 196 31.6
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-09 67.8 56 64.3
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 3.5e-08 63.2 55 65.5
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 9.5e-06 55.1 88 51.1


User provided reference genes

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