Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 5.3e-95 350.9 163 100.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.6e-70 268.9 173 76.3
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.0e-66 255.4 166 77.7
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 7.7e-46 187.6 149 65.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.8e-45 185.3 113 82.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 3.8e-37 158.7 152 55.9
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 3.8e-37 158.7 152 55.9
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 5.0e-37 158.3 152 56.6
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 8.5e-37 157.5 86 82.6
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 82.6
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.1e-36 157.1 86 81.4
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.9e-36 156.4 86 81.4
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.9e-36 156.4 101 72.3
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.0e-34 150.6 86 77.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.6e-33 146.0 174 48.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.4e-33 145.6 86 72.1
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 3.4e-33 145.6 86 72.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 3.4e-33 145.6 86 73.3
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 3.4e-33 145.6 86 73.3
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 4.4e-33 145.2 86 74.4
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.4e-33 145.2 86 74.4
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 4.4e-33 145.2 86 73.3
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 7.5e-33 144.4 86 73.3
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 7.5e-33 144.4 86 72.1
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 9.8e-33 144.1 86 74.4
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 9.8e-33 144.1 86 73.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 9.8e-33 144.1 86 72.1
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 9.8e-33 144.1 86 73.3
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.3e-32 143.7 86 73.3
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.3e-32 143.7 86 73.3
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.7e-32 143.3 86 72.1
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.7e-32 143.3 86 72.1
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.7e-32 143.3 86 73.3
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.7e-32 143.3 86 73.3
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.7e-32 143.3 86 72.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.2e-32 142.9 86 70.9
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.2e-32 142.9 86 70.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.2e-32 142.9 86 70.9
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.8e-32 142.5 86 70.9
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 2.8e-32 142.5 86 70.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.8e-32 142.5 86 72.1
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 3.7e-32 142.1 86 70.9
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 3.7e-32 142.1 86 73.3
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.8e-32 141.7 86 69.8
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.8e-32 141.7 86 70.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.8e-32 141.7 86 72.1
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 4.8e-32 141.7 86 72.1
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 8.3e-32 141.0 86 69.8
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 8.3e-32 141.0 86 70.9
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.3e-32 141.0 86 70.9
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.3e-32 141.0 86 70.9
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.1e-31 140.6 86 70.9
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.1e-31 140.6 86 70.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.1e-31 140.6 86 70.9
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.4e-31 140.2 92 68.5
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.4e-31 140.2 92 68.5
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.4e-31 140.2 86 69.8
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.4e-31 140.2 86 68.6
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.4e-31 140.2 86 72.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.4e-31 140.2 86 69.8
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.8e-31 139.8 86 72.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.8e-31 139.8 86 72.1
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.8e-31 139.8 86 69.8
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.8e-31 139.8 86 68.6
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 2.4e-31 139.4 86 69.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.4e-31 139.4 86 69.8
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 2.4e-31 139.4 86 72.1
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 3.1e-31 139.0 86 68.6
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 3.1e-31 139.0 86 69.8
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.1e-31 139.0 86 69.8
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 4.1e-31 138.7 86 70.9
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 4.1e-31 138.7 86 69.8
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 5.4e-31 138.3 86 70.9
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 5.4e-31 138.3 86 69.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 5.4e-31 138.3 86 67.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 7.0e-31 137.9 86 69.8
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 7.0e-31 137.9 86 68.6
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 7.0e-31 137.9 86 68.6
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 9.1e-31 137.5 86 68.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 9.1e-31 137.5 86 68.6
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 9.1e-31 137.5 86 67.4
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.2e-30 137.1 86 69.8
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.2e-30 137.1 86 68.6
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.6e-30 136.7 86 67.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-30 136.7 86 67.4
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-30 136.7 86 67.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-30 136.7 86 67.4
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.6e-30 136.7 86 65.1
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 2.0e-30 136.3 86 66.3
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.5e-30 135.6 93 66.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 3.5e-30 135.6 86 66.3
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 5.9e-30 134.8 95 64.2
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 7.7e-30 134.4 86 64.0
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.0e-29 134.0 86 64.0
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.0e-29 134.0 86 64.0
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.0e-29 134.0 86 66.3
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.7e-29 133.3 86 66.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.7e-29 133.3 86 68.6
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.7e-29 133.3 86 65.1
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.9e-29 132.5 86 65.1
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 8.6e-29 131.0 86 61.6
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.1e-28 130.6 86 67.4
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.1e-28 130.6 86 65.1
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.5e-28 130.2 86 64.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.5e-28 129.4 86 64.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 6.1e-27 124.8 86 61.6
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.0e-26 124.0 86 59.3
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.0e-26 124.0 86 59.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.3e-26 122.9 81 74.1
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.2e-24 116.3 86 57.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 6.3e-24 114.8 87 56.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.1e-23 114.0 85 56.5
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-23 113.6 86 59.3
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.1e-23 112.1 113 47.8
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 5.4e-23 111.7 80 67.5
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 2.0e-22 109.8 109 59.6
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.7e-22 109.4 86 53.5
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.7e-22 109.4 86 53.5
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.5e-22 109.0 63 73.0
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.5e-22 108.6 62 74.2
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 4.5e-22 108.6 87 56.3
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.9e-21 105.9 67 70.1
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 8.6e-21 104.4 67 70.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.3e-18 96.3 59 67.8
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 5.2e-18 95.1 88 44.3
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.6e-17 92.8 79 54.4
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.8e-17 91.7 58 77.6
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 5.8e-17 91.7 104 52.9
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 3.7e-16 89.0 86 43.0
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.2e-14 84.0 65 66.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.6e-14 83.6 99 40.4
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 5.6e-12 75.1 80 48.8
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 2.1e-11 73.2 37 78.4
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.5e-09 67.0 85 32.9
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 3.7e-08 62.4 50 60.0


User provided reference genes

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