Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 7.2e-104 380.6 189 100.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.1e-95 352.4 185 96.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-90 335.9 192 89.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-85 319.7 189 88.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.6e-85 318.9 192 87.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 4.8e-84 314.7 193 85.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.0e-82 309.3 188 86.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.5e-82 308.1 191 84.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.0e-81 307.0 193 83.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.3e-81 305.8 195 83.6
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 8.6e-81 303.9 194 81.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.1e-79 299.3 194 83.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.4e-75 284.6 203 74.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 5.0e-73 278.1 194 77.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.6e-73 277.7 202 72.8
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 6.6e-73 277.7 197 77.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.6e-73 277.7 199 76.4
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 8.6e-73 277.3 198 76.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.9e-72 276.2 195 77.4
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-72 275.8 197 76.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.5e-69 264.2 179 77.7
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 8.3e-68 260.8 196 69.9
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 4.0e-62 241.9 201 63.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 8.9e-62 240.7 192 64.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 5.8e-61 238.0 193 63.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.8e-61 237.3 192 64.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.7e-60 236.5 200 61.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.9e-60 235.0 191 64.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 6.4e-60 234.6 200 61.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.1e-59 231.9 206 59.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.4e-59 231.5 200 62.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.4e-59 231.5 208 58.7
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 5.4e-59 231.5 206 58.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 5.4e-59 231.5 195 62.6
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.4e-59 231.5 200 60.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.4e-59 231.5 200 60.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.0e-59 231.1 206 61.2
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-58 229.9 204 60.8
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.1e-58 229.6 200 60.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.1e-58 229.6 207 59.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.1e-58 229.6 201 62.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.5e-58 228.8 200 61.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.5e-58 228.8 200 61.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.6e-58 228.4 202 62.9
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.0e-57 227.3 215 59.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.3e-57 226.9 211 56.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.3e-57 226.1 210 59.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.9e-57 225.3 204 60.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 8.6e-57 224.2 217 58.1
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-56 223.8 197 60.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.9e-56 223.0 206 58.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-56 222.6 208 56.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.3e-56 221.1 195 60.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.2e-55 220.3 203 58.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-55 220.3 197 59.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.6e-55 219.9 192 62.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.1e-55 219.5 196 59.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.8e-55 219.2 201 58.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 4.7e-55 218.4 202 57.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.1e-55 217.6 198 58.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.1e-55 217.6 197 58.9
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.4e-54 216.9 199 57.3
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-54 216.9 199 57.3
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.1e-54 215.7 210 55.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.0e-54 215.3 203 56.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 5.2e-54 214.9 218 55.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.2e-53 213.8 203 56.7
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.5e-53 213.4 214 54.2
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.0e-53 213.0 216 54.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.0e-53 213.0 216 54.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.6e-53 212.6 209 54.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.4e-53 212.2 218 54.6
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 7.5e-53 211.1 190 57.9
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 7.5e-53 211.1 210 53.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.7e-52 208.8 206 54.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.7e-52 208.8 198 57.1
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 8.3e-52 207.6 208 52.9
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.3e-52 207.6 211 53.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.4e-51 206.8 220 54.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-51 206.5 185 58.9
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 9.2e-51 204.1 215 54.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-50 203.4 213 53.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.1e-50 203.0 214 53.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-50 201.8 215 52.6
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.6e-50 201.8 202 55.4
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.8e-50 201.1 208 55.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.8e-50 201.1 166 63.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.0e-49 200.7 224 52.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.3e-49 200.3 212 50.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.7e-49 199.9 190 56.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.3e-49 199.5 210 52.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 6.6e-49 198.0 202 54.0
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 8.6e-49 197.6 203 51.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.9e-48 196.4 204 52.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.9e-48 196.4 207 51.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.3e-48 195.3 184 56.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.3e-48 195.3 212 51.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.3e-48 194.5 196 56.6
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.3e-48 194.5 176 60.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.3e-48 194.5 196 54.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.1e-47 193.0 226 49.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-45 187.2 193 52.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.0e-45 186.4 207 54.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.6e-45 186.0 208 53.8
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 4.4e-45 185.3 206 53.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.2e-44 183.0 151 63.6
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.2e-44 183.0 206 48.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-44 181.4 159 59.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-43 180.6 194 51.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-42 177.2 211 46.9
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.5e-40 169.5 133 66.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.3e-40 168.7 208 47.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.6e-39 165.6 166 51.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 6.2e-39 164.9 185 52.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.4e-38 163.7 217 46.1
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 9.0e-38 161.0 175 49.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.7e-36 156.8 180 47.8
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.2e-36 156.4 200 43.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.4e-35 152.9 211 45.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.2e-35 152.5 181 44.2
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.1e-34 149.8 179 45.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-34 149.8 193 41.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 6.0e-34 148.3 146 53.4
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.7e-33 146.7 127 57.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.0e-33 146.0 200 41.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.0e-33 146.0 191 42.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.8e-31 138.7 215 39.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.1e-30 136.0 113 56.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.0e-30 135.6 134 56.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.3e-30 135.2 118 58.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 9.0e-30 134.4 214 39.7
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.4e-29 132.5 162 41.4
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.3e-27 124.4 131 45.8
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 9.3e-27 124.4 185 36.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-26 123.2 144 48.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.7e-25 118.2 183 42.1
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.5e-24 116.3 129 42.6
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.3e-24 115.9 99 57.6
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.4e-24 114.8 150 43.3
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-23 114.0 91 53.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.8e-22 110.2 192 38.5
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.6e-21 106.3 121 54.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 9.9e-21 104.4 130 41.5
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.2e-20 103.2 121 53.7
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.2e-20 103.2 95 52.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 4.9e-20 102.1 92 52.2
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.5e-18 95.9 86 50.0
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.8e-17 93.6 71 73.2
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-16 90.1 173 37.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.5e-16 89.7 133 37.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.3e-16 89.4 133 37.6
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.4e-14 84.0 68 66.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 6.9e-14 81.6 115 45.2
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.0e-13 80.1 70 67.1
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.0e-13 80.1 111 38.7
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 5.8e-13 78.6 70 65.7
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.4e-12 74.7 162 34.0
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.4e-11 73.9 70 64.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.2e-11 72.8 112 45.5
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 1.2e-10 70.9 55 70.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 7.4e-08 61.6 103 42.7
BcaC08g44641 Brassica carinata HOM05D004429 ORTHO05D021447 1.6e-07 60.5 45 75.6


User provided reference genes

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