Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p46120 Brassica napus HOM05D000170 ORTHO05D018666 1.6e-22 108.6 58 100.0
BraA09t40075Z Brassica rapa HOM05D001265 ORTHO05D001241 1.3e-16 89.0 47 97.9
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 7.3e-15 83.2 78 67.9
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 1.6e-14 82.0 78 66.7
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 2.1e-14 81.6 76 67.1
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 3.6e-14 80.9 77 66.2
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 8.1e-14 79.7 77 64.9
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 8.1e-14 79.7 78 64.1
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 2.3e-13 78.2 78 64.1
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 2.3e-13 78.2 77 63.6
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 3.1e-13 77.8 77 63.6
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 4.0e-13 77.4 78 62.8
BolC8t50445H Brassica oleracea HOM05D001265 ORTHO05D001241 4.0e-13 77.4 45 86.7
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 8.9e-13 76.3 78 60.3
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 8.9e-13 76.3 78 61.5
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 8.9e-13 76.3 78 61.5
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 8.9e-13 76.3 78 61.5
BcaB02g08534 Brassica carinata HOM05D000170 ORTHO05D007205 9.8e-12 72.8 66 65.2
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 9.8e-12 72.8 72 62.5
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 2.2e-11 71.6 72 62.5
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 2.9e-11 71.2 73 61.6
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 4.9e-11 70.5 72 61.1
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 6.4e-11 70.1 74 59.5
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 6.4e-11 70.1 73 60.3
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 8.3e-11 69.7 61 63.9
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 8.3e-11 69.7 60 68.3
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 8.3e-11 69.7 59 64.4
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 1.1e-10 69.3 77 58.4
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 1.1e-10 69.3 61 62.3
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 1.9e-10 68.6 73 58.9
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.9e-10 68.6 73 58.9
FAN05G1040 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.9e-10 68.6 73 58.9
FAN05G4883 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.9e-10 68.6 73 58.9
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.9e-10 68.6 73 58.9
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 3.2e-10 67.8 73 56.2
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 3.2e-10 67.8 62 61.3
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 3.2e-10 67.8 60 65.0
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 4.1e-10 67.4 59 64.4
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 5.4e-10 67.0 73 60.3
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 7.1e-10 66.6 71 60.6
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 7.1e-10 66.6 60 65.0
Peaxi162Scf00017g00118 Petunia axillaris HOM05D000170 ORTHO05D007205 9.2e-10 66.2 61 62.3
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 9.2e-10 66.2 73 56.2
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 1.2e-09 65.9 78 52.6
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 1.2e-09 65.9 74 55.4
BcaC07g39668 Brassica carinata HOM05D000170 ORTHO05D018666 1.6e-09 65.5 36 91.7
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 1.6e-09 65.5 74 55.4
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 1.6e-09 65.5 71 57.7
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 1.6e-09 65.5 73 58.9
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.6e-09 65.5 71 60.6
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 1.6e-09 65.5 73 57.5
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 1.6e-09 65.5 71 59.2
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 2.1e-09 65.1 61 62.3
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 2.1e-09 65.1 61 60.7
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 2.1e-09 65.1 73 56.2
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 2.1e-09 65.1 74 55.4
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 2.7e-09 64.7 59 61.0
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 2.7e-09 64.7 61 60.7
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 2.7e-09 64.7 78 51.3
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 2.7e-09 64.7 62 61.3
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 3.5e-09 64.3 74 54.1
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 3.5e-09 64.3 72 56.9
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 4.6e-09 63.9 72 54.2
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 6.0e-09 63.5 61 60.7
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 6.0e-09 63.5 59 61.0
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 6.0e-09 63.5 61 60.7
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 6.0e-09 63.5 77 54.5
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 7.8e-09 63.2 74 56.8
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 1.0e-08 62.8 61 57.4
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 1.0e-08 62.8 61 57.4
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 1.3e-08 62.4 73 57.5
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 1.3e-08 62.4 62 59.7
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 1.3e-08 62.4 62 59.7
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 1.7e-08 62.0 67 56.7
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 5.1e-08 60.5 64 59.4
AUR62029078 Chenopodium quinoa HOM05D000170 ORTHO05D007205 5.1e-08 60.5 74 48.6
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 5.1e-08 60.5 62 56.5
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 6.6e-08 60.1 62 58.1
AUR62026973 Chenopodium quinoa HOM05D000170 ORTHO05D007205 1.1e-07 59.3 74 48.6
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 3.3e-07 57.8 62 51.6
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 5.6e-07 57.0 71 53.5
Nitab4.5_0002818g0130 Nicotiana tabacum HOM05D000170 ORTHO05D018666 7.3e-07 56.6 38 73.7
Zm00001eb190920 Zea mays HOM05D000170 ORTHO05D007205 7.3e-07 56.6 57 49.1
SEGI_14789 Sequoiadendron giganteum HOM05D000170 ORTHO05D007205 1.6e-06 55.5 77 44.2
Os02g0823400 Oryza sativa ssp. japonica HOM05D000170 ORTHO05D007205 2.1e-06 55.1 57 49.1
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 2.8e-06 54.7 71 49.3
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 3.6e-06 54.3 71 47.9
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 3.6e-06 54.3 71 47.9
EL10Ac7g16712 Beta vulgaris HOM05D000170 ORTHO05D007205 6.2e-06 53.5 52 57.7


User provided reference genes

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