Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 1.5e-62 243.0 157 100.0
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 9.7e-62 240.4 157 98.7
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 1.3e-61 240.0 157 98.1
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 8.2e-61 237.3 157 96.8
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 5.3e-60 234.6 157 97.5
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.4e-57 226.5 157 75.8
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 4.2e-57 224.9 157 91.1
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 6.1e-56 221.1 157 89.2
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.3e-55 219.9 157 89.2
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.9e-54 216.1 157 88.5
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.3e-50 203.4 121 84.3
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.5e-38 163.3 133 65.4
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 1.3e-34 150.2 119 66.4
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 6.5e-34 147.9 138 61.6
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 8.5e-34 147.5 136 60.3
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 8.5e-34 147.5 119 65.5
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.5e-33 146.7 136 60.3
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 2.5e-33 146.0 119 65.5
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 3.2e-33 145.6 136 59.6
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 4.2e-33 145.2 140 57.1
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 5.5e-33 144.8 119 63.9
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 5.5e-33 144.8 119 64.7
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.2e-33 144.4 119 65.5
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.2e-32 143.7 147 58.5
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 1.2e-32 143.7 119 63.9
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-32 143.3 119 63.9
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-32 143.3 119 63.9
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 1.6e-32 143.3 131 58.0
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 1.6e-32 143.3 136 57.4
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 1.6e-32 143.3 119 64.7
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.1e-32 142.9 131 58.8
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 2.1e-32 142.9 119 63.9
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.1e-32 142.9 140 56.4
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 63.9
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 63.9
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 64.7
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 64.7
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 3.6e-32 142.1 130 60.0
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 64.7
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 63.9
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 4.7e-32 141.7 137 56.9
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.7e-32 141.7 119 63.9
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 4.7e-32 141.7 119 64.7
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 64.7
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 63.9
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 8.0e-32 141.0 119 63.9
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 8.0e-32 141.0 119 63.0
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 1.0e-31 140.6 137 56.9
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.8e-31 139.8 119 63.0
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.8e-31 139.8 119 63.0
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.8e-31 139.8 137 57.7
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 2.3e-31 139.4 119 63.0
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.3e-31 139.4 136 58.1
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 2.3e-31 139.4 119 63.0
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.3e-31 139.4 117 64.1
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 2.3e-31 139.4 119 63.9
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 3.0e-31 139.0 130 56.2
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 3.0e-31 139.0 130 56.2
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 3.0e-31 139.0 134 57.5
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 3.0e-31 139.0 136 58.1
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 3.0e-31 139.0 136 58.1
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 3.0e-31 139.0 133 57.1
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.0e-31 138.7 119 62.2
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 4.0e-31 138.7 122 60.7
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 4.0e-31 138.7 134 56.7
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 5.2e-31 138.3 131 56.5
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 5.2e-31 138.3 119 65.5
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 5.2e-31 138.3 119 66.4
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 5.2e-31 138.3 134 66.4
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 63.0
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 6.7e-31 137.9 139 55.4
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 61.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 8.8e-31 137.5 96 77.1
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 8.8e-31 137.5 119 63.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.2e-30 137.1 119 59.7
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-30 137.1 119 61.3
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 2.0e-30 136.3 82 84.1
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 2.0e-30 136.3 124 59.7
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 2.6e-30 136.0 136 57.4
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 2.6e-30 136.0 142 54.9
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 3.3e-30 135.6 133 56.4
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 3.3e-30 135.6 111 65.8
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.4e-30 135.2 119 61.3
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 4.4e-30 135.2 119 65.5
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.3e-29 133.7 128 58.6
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.3e-29 133.7 119 60.5
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 1.3e-29 133.7 119 60.5
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 2.2e-29 132.9 119 60.5
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 2.2e-29 132.9 118 61.0
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 2.8e-29 132.5 143 53.1
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 3.7e-29 132.1 82 81.7
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.7e-29 132.1 119 59.7
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 4.8e-29 131.7 123 60.2
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 8.2e-29 131.0 131 57.3
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 8.2e-29 131.0 128 58.6
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 1.1e-28 130.6 119 58.0
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.1e-28 130.6 128 58.6
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.1e-28 130.6 119 59.7
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 1.1e-28 130.6 130 66.2
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 1.4e-28 130.2 119 58.0
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 1.4e-28 130.2 119 58.0
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.4e-28 130.2 119 58.8
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 1.8e-28 129.8 119 58.8
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 1.8e-28 129.8 128 56.2
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.2e-27 127.1 146 52.7
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.6e-27 126.7 115 60.0
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 3.5e-27 125.6 140 53.6
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 5.9e-27 124.8 128 57.8
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.0e-26 124.0 119 56.3
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 8.5e-26 120.9 98 67.3
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 8.5e-26 120.9 120 60.0
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.2e-25 119.0 128 53.9
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.6e-24 116.7 81 74.1
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 2.7e-24 115.9 119 58.8
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 3.6e-24 115.5 87 67.8
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 6.1e-24 114.8 91 65.9
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.8e-23 113.2 74 77.0
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 6.8e-23 111.3 82 65.9
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 3.4e-22 109.0 85 97.6
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 1.1e-20 104.0 84 59.5
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 2.4e-20 102.8 74 68.9
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 7.0e-20 101.3 156 50.6
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 8.6e-18 94.4 150 43.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 8.6e-18 94.4 82 57.3
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 5.2e-15 85.1 89 52.8
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.2e-14 84.0 84 56.0
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 5.7e-14 81.6 86 52.3
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 2.2e-13 79.7 74 91.9
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 2.2e-13 79.7 112 44.6
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 6.3e-13 78.2 146 34.9
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 1.8e-12 76.6 92 50.0
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.5e-09 66.2 74 51.4
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.6e-09 65.1 34 88.2
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.6e-09 65.1 46 65.2
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.5e-06 57.0 33 75.8
A07p21230 Brassica napus HOM05D005449 ORTHO05D027985 2.6e-06 56.2 37 73.0
BraA07t29810Z Brassica rapa HOM05D005449 ORTHO05D027985 2.6e-06 56.2 37 73.0


User provided reference genes

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