Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 1.8e-67 259.2 140 100.0
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 1.4e-64 249.6 140 97.9
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 1.1e-61 240.0 140 88.6
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 4.3e-61 238.0 140 87.1
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 3.1e-59 231.9 134 86.6
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 3.2e-40 168.7 132 64.4
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 5.6e-37 157.9 120 68.3
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 6.2e-36 154.5 122 66.4
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 1.4e-35 153.3 123 65.9
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 1.7e-33 146.4 119 68.1
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 3.3e-29 132.1 113 65.5
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 4.5e-26 121.7 118 51.7
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 4.3e-21 105.1 66 75.8
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 6.9e-19 97.8 119 47.9
BcaC02g09270 Brassica carinata HOM05D007333 ORTHO05D008874 1.9e-16 89.7 81 64.2
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 9.3e-16 87.4 110 44.5
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 1.2e-15 87.0 79 64.6
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 4.6e-15 85.1 126 40.5
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 1.6e-12 76.6 120 40.0
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 2.1e-12 76.3 105 43.8
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 3.7e-12 75.5 116 38.8
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 6.3e-12 74.7 142 39.4
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 8.2e-12 74.3 75 45.3
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 2.4e-11 72.8 127 39.4
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 2.4e-11 72.8 121 41.3
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 3.1e-11 72.4 103 39.8
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 4.1e-11 72.0 147 37.4
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 4.1e-11 72.0 103 39.8
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 6.9e-11 71.2 124 36.3
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 6.9e-11 71.2 124 36.3
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 6.9e-11 71.2 120 38.3
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 1.2e-10 70.5 113 39.8
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 1.2e-10 70.5 142 34.5
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 2.0e-10 69.7 95 45.3
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 3.4e-10 68.9 117 37.6
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 4.5e-10 68.6 102 37.3
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 5.9e-10 68.2 136 34.6
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 7.6e-10 67.8 123 39.8
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 1.3e-09 67.0 102 35.3
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 1.7e-09 66.6 117 37.6
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 1.7e-09 66.6 144 34.7
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.7e-09 66.6 117 35.9
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.2e-09 66.2 117 36.8
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 2.2e-09 66.2 124 35.5
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 2.9e-09 65.9 94 43.6
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 2.9e-09 65.9 106 43.4
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 2.9e-09 65.9 116 38.8
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 3.8e-09 65.5 103 38.8
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 3.8e-09 65.5 127 40.2
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 3.8e-09 65.5 114 36.8
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 5.0e-09 65.1 125 36.8
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 5.0e-09 65.1 124 35.5
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 6.5e-09 64.7 118 38.1
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 8.5e-09 64.3 103 36.9
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 8.5e-09 64.3 102 36.3
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 1.1e-08 63.9 96 42.7
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 1.1e-08 63.9 104 39.4
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 1.4e-08 63.5 114 35.1
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.9e-08 63.2 69 47.8
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 2.5e-08 62.8 82 41.5
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 2.5e-08 62.8 72 47.2
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.2e-08 62.4 96 38.5
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.2e-08 62.4 96 38.5
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.2e-08 62.4 96 38.5
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.2e-08 62.4 97 42.3
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 4.2e-08 62.0 46 54.3
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 5.5e-08 61.6 96 44.8
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 5.5e-08 61.6 96 38.5
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.5e-08 61.6 139 34.5
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 7.2e-08 61.2 123 35.8
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 7.2e-08 61.2 69 46.4
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 9.3e-08 60.8 118 36.4
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 1.2e-07 60.5 101 34.7
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.2e-07 60.5 101 40.6
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 1.6e-07 60.1 107 35.5
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 1.6e-07 60.1 63 47.6
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 1.6e-07 60.1 110 35.5
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 2.7e-07 59.3 115 35.7
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 6.1e-07 58.2 58 50.0
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 7.9e-07 57.8 51 52.9
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 7.9e-07 57.8 95 40.0
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 1.0e-06 57.4 57 54.4
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 1.8e-06 56.6 126 35.7
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 1.8e-06 56.6 82 40.2
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 3.0e-06 55.8 53 50.9
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 3.9e-06 55.5 63 42.9
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 5.1e-06 55.1 80 38.8
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 8.7e-06 54.3 131 34.4


User provided reference genes

Program Settings