Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 8.0e-58 226.9 114 100.0
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 8.0e-58 226.9 114 100.0
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 8.3e-55 216.9 114 93.9
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 8.3e-55 216.9 114 93.9
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.8e-54 215.7 114 93.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-52 209.9 114 91.2
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 5.2e-49 197.6 114 86.0
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 2.3e-44 182.2 114 81.6
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 2.3e-44 182.2 114 81.6
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 2.5e-43 178.7 114 79.8
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 3.3e-43 178.3 115 78.3
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 4.7e-42 174.5 114 78.9
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.5e-40 169.5 116 77.6
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 6.4e-39 164.1 110 77.3
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 1.0e-36 156.8 115 73.0
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 7.3e-35 150.6 122 68.0
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.1e-33 146.7 98 78.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 7.1e-30 134.0 124 57.3
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.9e-14 82.8 127 43.3
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 2.4e-14 82.4 124 44.4
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 7.1e-14 80.9 85 55.3
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 7.9e-13 77.4 101 45.5
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.0e-12 77.0 111 45.0
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.0e-12 77.0 62 64.5
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.3e-12 76.6 97 49.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.3e-12 75.9 96 45.8
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 3.9e-12 75.1 82 46.3
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 5.1e-12 74.7 113 44.2
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.5e-11 73.2 92 48.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.9e-11 72.8 123 42.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.9e-11 72.8 92 46.7
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 3.3e-11 72.0 79 55.7
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 4.3e-11 71.6 112 43.8
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 4.3e-11 71.6 94 46.8
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 4.3e-11 71.6 89 44.9
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 9.6e-11 70.5 79 54.4
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.6e-11 70.5 115 40.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.6e-11 70.5 115 40.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.3e-10 70.1 98 43.9
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 2.1e-10 69.3 107 41.1
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.8e-10 68.9 66 57.6
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 3.6e-10 68.6 80 48.8
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 4.8e-10 68.2 107 43.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 4.8e-10 68.2 132 40.2
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 6.2e-10 67.8 93 45.2
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 8.1e-10 67.4 106 39.6
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 8.1e-10 67.4 123 39.0
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 8.1e-10 67.4 123 39.0
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.1e-09 67.0 72 54.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.4e-09 66.6 92 44.6
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.8e-09 66.2 114 39.5
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.8e-09 66.2 120 36.7
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 2.4e-09 65.9 126 37.3
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 3.1e-09 65.5 111 40.5
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 5.3e-09 64.7 117 38.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 9.0e-09 63.9 126 35.7
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.5e-08 63.2 106 40.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.5e-08 63.2 60 51.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.5e-08 63.2 101 40.6
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.5e-08 63.2 114 41.2
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 2.0e-08 62.8 91 41.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.0e-08 62.8 68 50.0
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.0e-08 62.8 68 50.0
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.6e-08 62.4 63 52.4
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.6e-08 62.4 72 51.4
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 2.6e-08 62.4 103 37.9
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 3.4e-08 62.0 78 48.7
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 7.6e-08 60.8 85 42.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 7.6e-08 60.8 57 52.6
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 7.6e-08 60.8 65 47.7
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.9e-07 58.9 80 43.8
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.9e-07 58.9 64 48.4
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.2e-06 55.5 114 37.7
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-06 55.1 54 48.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-06 55.1 54 48.1
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 5.5e-06 54.7 53 50.9
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 5.5e-06 54.7 53 50.9


User provided reference genes

Program Settings