Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.7e-157 557.8 272 100.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.8e-87 326.6 199 82.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 4.0e-79 298.9 235 69.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 4.0e-79 298.9 235 69.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 6.8e-79 298.1 235 68.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 2.0e-78 296.6 235 67.7
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 3.4e-78 295.8 235 68.1
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 9.8e-78 294.3 236 68.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.2e-77 293.1 235 66.8
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 4.1e-76 288.9 260 62.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 2.0e-75 286.6 236 65.7
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 4.5e-75 285.4 236 65.3
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 1.4e-71 273.9 236 62.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 1.4e-68 263.8 235 59.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 2.3e-66 256.5 235 58.3
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 2.3e-66 256.5 235 58.3
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 5.0e-66 255.4 235 57.9
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 1.1e-65 254.2 235 57.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.9e-65 253.4 235 55.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 4.3e-65 252.3 235 56.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 5.6e-65 251.9 235 57.4
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 5.6e-65 251.9 235 56.6
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 1.6e-64 250.4 235 56.2
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 2.1e-64 250.0 235 55.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 2.1e-64 250.0 235 55.3
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 2.8e-64 249.6 235 57.4
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 1.0e-63 247.7 235 56.6
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 1.4e-63 247.3 235 54.9
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.4e-63 247.3 235 54.0
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 1.8e-63 246.9 235 56.6
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 2.3e-63 246.5 235 54.9
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 2.3e-63 246.5 235 55.3
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 4.0e-63 245.7 235 54.9
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 4.0e-63 245.7 246 53.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 5.2e-63 245.4 235 54.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 6.8e-63 245.0 235 56.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 6.8e-63 245.0 240 54.2
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 8.9e-63 244.6 235 54.9
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 8.9e-63 244.6 235 55.3
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 1.2e-62 244.2 235 53.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 1.2e-62 244.2 235 54.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.5e-62 243.8 236 55.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 2.0e-62 243.4 235 54.0
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 2.0e-62 243.4 236 55.9
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.0e-62 243.4 235 55.7
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 2.0e-62 243.4 235 55.7
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 3.4e-62 242.7 235 55.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 3.4e-62 242.7 235 55.7
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 4.4e-62 242.3 235 54.5
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 4.4e-62 242.3 235 55.3
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 4.4e-62 242.3 235 55.3
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 5.7e-62 241.9 234 54.7
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.7e-62 241.9 235 55.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.7e-62 241.9 235 55.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 5.7e-62 241.9 235 55.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 5.7e-62 241.9 235 55.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 7.5e-62 241.5 235 54.9
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 9.8e-62 241.1 246 51.2
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 9.8e-62 241.1 235 56.2
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 1.3e-61 240.7 235 54.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 1.7e-61 240.4 235 53.2
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 2.2e-61 240.0 235 55.3
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 2.9e-61 239.6 235 54.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 2.9e-61 239.6 235 55.3
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 4.9e-61 238.8 235 52.8
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 4.9e-61 238.8 235 53.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 6.4e-61 238.4 236 54.7
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 6.4e-61 238.4 235 54.0
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 6.4e-61 238.4 235 54.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 6.4e-61 238.4 235 55.3
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 1.1e-60 237.7 235 51.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-60 237.7 235 51.5
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 1.1e-60 237.7 235 54.5
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 1.1e-60 237.7 246 52.4
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.8e-60 236.9 235 55.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 1.8e-60 236.9 235 52.3
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 1.8e-60 236.9 237 54.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.4e-60 236.5 235 51.1
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.4e-60 236.5 235 51.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 2.4e-60 236.5 235 53.2
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 3.2e-60 236.1 235 54.0
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 3.2e-60 236.1 235 54.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.1e-60 235.7 235 51.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.1e-60 235.7 236 53.4
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 5.4e-60 235.3 235 51.1
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 7.0e-60 235.0 235 51.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 9.2e-60 234.6 235 52.8
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 9.2e-60 234.6 235 53.6
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 9.2e-60 234.6 230 55.2
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 1.2e-59 234.2 236 54.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.2e-59 234.2 246 50.8
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 2.0e-59 233.4 247 50.6
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 2.7e-59 233.0 247 50.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 2.7e-59 233.0 235 52.3
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 2.7e-59 233.0 236 55.1
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 3.5e-59 232.6 235 53.2
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.0e-58 231.1 235 52.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 3.0e-58 229.6 258 48.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.0e-58 229.6 236 54.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 5.0e-58 228.8 235 52.8
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.1e-57 227.6 235 53.2
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 2.5e-57 226.5 235 51.9
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 4.3e-57 225.7 236 54.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 1.2e-54 217.6 235 51.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 6.4e-53 211.8 251 45.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 1.2e-51 207.6 240 49.6
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.8e-48 196.4 236 52.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.4e-44 184.1 201 50.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 9.2e-44 181.4 198 49.5
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.6e-40 170.6 104 82.7
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-39 167.5 229 45.4
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.3e-37 161.0 236 41.9
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 9.2e-36 154.8 207 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 3.9e-34 149.4 246 39.0
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 5.1e-34 149.1 233 39.1
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.9e-31 138.7 253 37.2
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.3e-29 134.4 241 37.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.3e-29 134.4 241 37.8
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 9.3e-28 128.3 106 60.4
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.6e-27 125.9 240 35.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.0e-26 124.8 110 58.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 7.3e-25 118.6 91 61.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.1e-24 117.1 248 30.2
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 4.6e-19 99.4 154 39.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.3e-17 93.2 244 30.3
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-16 90.5 177 37.9
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.1e-15 88.2 229 32.3
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.9e-13 80.1 54 75.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.2e-11 74.7 86 45.3


User provided reference genes

Program Settings