Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 3315.4 1887 100.0
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 0.0e+00 3263.0 1903 98.5
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 3063.5 1898 92.3
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 3063.5 1898 92.3
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 0.0e+00 3033.8 1953 89.7
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2815.0 1957 86.9
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 2144.0 2257 64.5
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 2058.9 2250 62.3
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 2024.6 2188 62.7
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 2000.7 2191 62.1
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1932.5 2119 62.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1898.2 2145 59.4
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1890.9 2302 58.7
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1430.6 2276 50.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 8.1e-272 941.8 2453 38.6
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 1.4e-271 941.0 2460 38.7
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 1.3e-269 934.5 2438 38.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 9.3e-260 901.7 2441 38.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 1.5e-254 884.4 2430 37.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.4e-252 877.9 2431 37.5
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.2e-251 874.8 2430 37.5
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 9.6e-249 865.1 2385 37.3
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 8.1e-248 862.1 2418 37.3
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 2.4e-247 860.5 2448 37.4
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 3.4e-246 856.7 2453 37.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 4.2e-244 849.7 2419 37.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 6.0e-243 845.9 2443 37.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 6.0e-243 845.9 2505 36.5
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 7.9e-243 845.5 2453 37.1
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 3.9e-242 843.2 2419 37.4
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 3.9e-242 843.2 2430 37.5
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 2.4e-239 833.9 2408 38.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 2.6e-238 830.5 2459 36.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 3.8e-237 826.6 2433 37.2
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 5.5e-236 822.8 2494 36.0
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 6.0e-235 819.3 2486 36.5
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 6.0e-235 819.3 2438 36.9
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 5.7e-233 812.8 2343 36.7
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 1.3e-232 811.6 2352 36.9
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 1.3e-229 801.6 2325 36.3
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 9.4e-228 795.4 2455 36.3
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 9.4e-228 795.4 2510 35.9
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 8.8e-226 788.9 2448 36.6
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 6.3e-224 782.7 2502 35.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 2.4e-223 780.8 2348 36.6
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 1.2e-222 778.5 2406 37.1
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 2.0e-222 777.7 2412 36.0
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.9e-221 773.9 2512 35.5
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 8.5e-221 772.3 2411 36.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 7.2e-220 769.2 2423 35.7
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 6.1e-219 766.1 2156 38.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.9e-218 763.5 2509 35.5
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 4.4e-217 760.0 2270 36.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 9.7e-217 758.8 2424 35.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 4.8e-216 756.5 2448 35.5
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 6.3e-216 756.1 2425 35.6
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 6.3e-216 756.1 2410 36.4
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 1.1e-215 755.4 2430 34.7
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 3.1e-215 753.8 2339 36.7
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 2.0e-214 751.1 2392 35.6
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 5.9e-214 749.6 2443 36.4
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 8.5e-213 745.7 2283 36.4
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 5.5e-212 743.0 1963 39.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 3.0e-210 737.3 2429 35.6
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 9.7e-209 732.3 2348 36.2
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 8.2e-208 729.2 2478 34.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 2.6e-206 724.2 2236 36.9
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 4.5e-206 723.4 2421 35.5
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 4.5e-206 723.4 2439 34.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 1.3e-205 721.8 2420 35.2
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 2.9e-205 720.7 2338 36.1
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.0e-202 712.2 2448 34.6
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 1.4e-202 711.8 2294 36.0
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 2.3e-202 711.1 2326 36.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 3.3e-201 707.2 2425 34.8
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 1.3e-200 705.3 2414 35.5
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 6.3e-200 703.0 2149 36.8
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 1.1e-199 702.2 2398 34.9
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 1.8e-199 701.4 2343 35.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 1.3e-197 695.3 2210 35.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 6.5e-197 693.0 2346 36.4
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 1.5e-196 691.8 2219 36.5
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 3.2e-196 690.6 2366 33.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 1.2e-195 688.7 2371 34.7
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 2.7e-195 687.6 2392 35.0
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 1.5e-193 681.8 2319 34.1
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 9.8e-193 679.1 2443 34.1
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 3.7e-192 677.2 2444 34.4
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 5.9e-190 669.8 2337 36.4
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 3.6e-187 660.6 2417 34.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 7.5e-185 652.9 2539 33.5
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 4.9e-184 650.2 2156 36.2
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 3.1e-178 630.9 2123 35.6
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 4.9e-176 623.6 2324 34.0
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 1.3e-173 615.5 2330 34.3
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 1.5e-172 612.1 2413 34.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.6e-171 608.6 2347 33.1
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 1.1e-170 605.9 2411 34.3
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 1.3e-160 572.4 2359 33.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 1.4e-154 552.4 2283 32.2
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 2.1e-150 538.5 2186 31.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 2.5e-148 531.6 1825 36.0
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 2.6e-145 521.5 2328 30.5
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-129 469.2 949 41.0
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 2.0e-129 468.8 2362 30.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 1.1e-127 463.0 2187 30.2
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.4e-119 436.0 1068 40.9
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.0e-117 429.9 1260 34.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.9e-116 425.6 1483 36.5
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 4.3e-108 397.9 2168 30.7
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 7.0e-98 364.0 1016 41.2
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.4e-90 339.0 651 41.9
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.9e-88 332.0 1510 31.5
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 4.2e-87 328.2 2139 30.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 2.2e-80 305.8 2389 27.9
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.5e-80 303.9 1306 29.9
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 9.1e-74 283.9 438 48.2
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.9e-71 276.2 1609 31.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 6.1e-70 271.2 436 45.4
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 7.8e-65 254.2 2327 26.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.2e-62 246.9 710 33.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.6e-57 229.9 964 33.8
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.5e-55 220.7 888 35.7
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.6e-54 218.8 429 40.8
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-45 190.3 821 30.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 4.1e-42 178.7 242 47.9
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 3.0e-40 172.6 1520 28.4
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.1e-39 170.6 650 29.4
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.2e-38 167.2 1951 26.4
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.6e-38 165.6 432 33.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 8.9e-37 161.0 329 37.7
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.0e-32 146.0 1142 25.9
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 6.9e-29 134.8 717 28.7
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.4e-28 132.5 1326 29.4
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 7.1e-26 124.8 218 41.7
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 6.0e-25 121.7 218 41.3
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.3e-23 115.5 885 31.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.4e-21 110.5 857 26.8
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.8e-21 110.2 1170 25.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.6e-20 106.3 500 28.6
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.2e-18 99.0 1219 23.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.1e-14 86.7 82 61.0
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 3.4e-12 79.3 651 27.0
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 5.8e-12 78.6 212 32.1
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 6.5e-11 75.1 694 26.1
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 7.4e-07 61.6 158 38.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 2.1e-06 60.1 300 27.7
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 8.2e-06 58.2 169 32.0


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