Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p42840 Brassica napus HOM05D000499 ORTHO05D027942 5.2e-30 133.7 64 100.0
BraA05t20523Z Brassica rapa HOM05D000499 ORTHO05D027942 5.4e-27 123.6 59 98.3
C09p39260 Brassica napus HOM05D000499 ORTHO05D007471 7.0e-11 70.1 42 78.6
BolC9t56805H Brassica oleracea HOM05D000499 ORTHO05D007471 7.0e-11 70.1 42 78.6
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 2.0e-10 68.6 42 76.2
BcaC01g02034 Brassica carinata HOM05D000499 ORTHO05D011058 2.7e-10 68.2 39 79.5
Thhalv10013482m.g Eutrema salsugineum HOM05D000499 ORTHO05D007471 3.5e-10 67.8 42 73.8
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 7.8e-10 66.6 42 73.8
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 1.0e-09 66.2 38 78.9
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 1.0e-09 66.2 38 78.9
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 1.0e-09 66.2 38 78.9
BcaC01g06051 Brassica carinata HOM05D000499 ORTHO05D007471 3.9e-09 64.3 38 76.3
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 3.9e-09 64.3 38 76.3
AL8G18540 Arabidopsis lyrata HOM05D000499 ORTHO05D007471 6.6e-09 63.5 42 71.4
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 8.6e-09 63.2 42 71.4
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 1.1e-08 62.8 42 69.0
C07p02820 Brassica napus HOM05D000499 ORTHO05D027942 1.5e-08 62.4 32 87.5
BolC7t40679H Brassica oleracea HOM05D000499 ORTHO05D027942 1.5e-08 62.4 32 87.5
Carub.0008s0636 Capsella rubella HOM05D000499 ORTHO05D007471 1.5e-08 62.4 42 69.0
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 3.3e-08 61.2 42 69.0
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 3.3e-08 61.2 47 59.6
Oeu015605.2 Olea europaea HOM05D000499 ORTHO05D007471 4.3e-08 60.8 42 61.9
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 5.6e-08 60.5 42 66.7
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 1.2e-07 59.3 42 61.9
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 1.6e-07 58.9 42 59.5
ATR0733G207 Amborella trichopoda HOM05D000499 ORTHO05D007471 2.1e-07 58.5 38 63.2
Oeu004672.1 Olea europaea HOM05D000499 ORTHO05D007471 2.8e-07 58.2 42 59.5
Ah.07g208480 Amaranthus hybridus HOM05D000499 ORTHO05D007471 3.6e-07 57.8 42 59.5
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 4.7e-07 57.4 42 57.1
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 6.2e-07 57.0 42 59.5
AUR62040075 Chenopodium quinoa HOM05D000499 ORTHO05D007471 8.1e-07 56.6 42 59.5
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 8.1e-07 56.6 42 57.1
Os03g0769050 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 8.1e-07 56.6 42 61.9
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 1.1e-06 56.2 42 57.1
CANSAT56G4116 Cannabis sativa HOM05D000499 ORTHO05D007471 1.4e-06 55.8 42 59.5
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 1.4e-06 55.8 42 54.8
Nn5g29461 Nelumbo nucifera HOM05D000499 ORTHO05D007471 1.8e-06 55.5 42 59.5
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 2.3e-06 55.1 42 54.8
AUR62033863 Chenopodium quinoa HOM05D000499 ORTHO05D007471 2.3e-06 55.1 42 57.1
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 2.3e-06 55.1 42 52.4
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 2.3e-06 55.1 42 54.8
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 2.3e-06 55.1 42 54.8
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 3.1e-06 54.7 42 57.1
Dinv39368 Davidia involucrata HOM05D000499 ORTHO05D007471 3.1e-06 54.7 42 57.1
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 3.1e-06 54.7 42 57.1
RcHm_v2.0_Chr1g0318301 Rosa chinensis HOM05D000499 ORTHO05D007471 3.1e-06 54.7 46 58.7
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 3.1e-06 54.7 42 57.1
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 3.1e-06 54.7 42 59.5
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 4.0e-06 54.3 42 52.4
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 4.0e-06 54.3 42 57.1
Aqoxy2G03993 Aquilegia oxysepala HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 57.1
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
Potri.002G149900 Populus trichocarpa HOM05D000499 ORTHO05D007471 5.2e-06 53.9 38 55.3
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 5.2e-06 53.9 42 52.4
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 5.2e-06 53.9 36 58.3
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 6.8e-06 53.5 46 54.3
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 6.8e-06 53.5 36 61.1
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 8.9e-06 53.1 42 52.4
Zm00001eb213920 Zea mays HOM05D000499 ORTHO05D007471 8.9e-06 53.1 46 56.5


User provided reference genes

Program Settings