Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 9.6e-68 260.0 128 100.0
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 9.6e-68 260.0 128 100.0
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 2.4e-63 245.4 129 93.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 7.1e-63 243.8 128 93.8
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 7.1e-63 243.8 128 93.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 2.1e-62 242.3 128 92.2
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.6e-62 241.1 128 91.4
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 4.6e-62 241.1 128 93.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.6e-62 241.1 128 91.4
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.0e-61 240.0 127 92.1
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.3e-61 239.6 128 91.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.3e-61 238.8 126 91.3
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.6e-59 232.6 128 89.1
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 6.2e-59 230.7 128 87.5
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.1e-58 229.9 128 87.5
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.2e-57 226.5 128 85.9
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.2e-57 226.5 128 84.4
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 6.5e-56 220.7 128 82.8
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 6.5e-56 220.7 128 82.8
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.2e-54 216.5 128 81.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 3.5e-54 214.9 115 91.3
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 4.6e-54 214.5 128 82.0
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.0e-53 213.4 128 78.1
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 5.1e-53 211.1 128 78.9
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 3.3e-52 208.4 128 77.3
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 3.3e-52 208.4 128 78.1
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 4.3e-52 208.0 128 75.8
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 2.1e-51 205.7 128 76.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 6.2e-51 204.1 128 76.6
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.2e-51 204.1 128 75.8
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.1e-50 203.4 128 75.8
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.1e-50 203.4 128 78.1
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-50 203.0 128 75.8
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.8e-50 202.6 128 74.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 2.4e-50 202.2 128 75.8
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 4.1e-50 201.4 128 75.8
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 6.9e-50 200.7 128 73.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 9.0e-50 200.3 128 75.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 9.0e-50 200.3 128 73.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.2e-49 199.9 128 74.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.2e-49 199.9 128 74.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-49 199.9 128 71.9
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.2e-49 199.9 128 78.1
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.5e-49 199.5 128 74.2
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.6e-49 198.7 127 72.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.4e-49 198.4 126 77.0
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.4e-49 198.4 126 77.0
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 3.4e-49 198.4 128 75.8
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 4.5e-49 198.0 128 74.2
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 4.5e-49 198.0 128 76.6
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 4.5e-49 198.0 128 75.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 4.5e-49 198.0 127 74.0
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 5.8e-49 197.6 128 72.7
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 5.8e-49 197.6 128 75.0
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.8e-49 197.6 128 73.4
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 5.8e-49 197.6 128 71.1
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 7.6e-49 197.2 128 75.8
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.0e-48 196.8 128 71.9
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.3e-48 196.4 128 71.1
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 1.7e-48 196.1 128 72.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.7e-48 196.1 128 73.4
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.7e-48 196.1 128 71.9
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.2e-48 195.7 126 73.8
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.9e-48 195.3 128 75.0
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.9e-48 195.3 128 73.4
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 2.9e-48 195.3 128 74.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 3.8e-48 194.9 128 75.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 3.8e-48 194.9 128 72.7
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 3.8e-48 194.9 128 72.7
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 3.8e-48 194.9 128 73.4
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 5.0e-48 194.5 128 71.1
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 6.5e-48 194.1 128 71.9
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 6.5e-48 194.1 128 74.2
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 6.5e-48 194.1 128 74.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.5e-48 194.1 128 72.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 8.4e-48 193.7 128 70.3
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-47 193.4 128 73.4
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.1e-47 193.4 128 74.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.1e-47 193.4 128 75.0
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.1e-47 193.4 128 74.2
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.4e-47 193.0 128 73.4
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.9e-47 192.6 127 72.4
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 1.9e-47 192.6 128 71.9
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.2e-47 191.8 128 71.9
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.2e-47 191.8 126 74.6
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 3.2e-47 191.8 128 72.7
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 3.2e-47 191.8 128 74.2
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 3.2e-47 191.8 128 73.4
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 4.2e-47 191.4 128 72.7
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 4.2e-47 191.4 128 69.5
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 5.5e-47 191.0 128 73.4
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.1e-47 190.7 126 73.8
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 7.1e-47 190.7 128 70.3
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.1e-47 190.7 128 72.7
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 9.3e-47 190.3 128 68.8
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.6e-46 189.5 126 72.2
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.6e-46 189.5 128 72.7
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 2.1e-46 189.1 128 71.1
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.7e-46 188.7 129 70.5
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 3.5e-46 188.3 128 71.9
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 3.5e-46 188.3 128 71.1
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.5e-46 188.3 128 71.1
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 3.5e-46 188.3 126 71.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 4.6e-46 188.0 128 71.1
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 4.6e-46 188.0 127 70.1
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 6.1e-46 187.6 128 71.9
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.1e-46 187.6 128 69.5
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 6.1e-46 187.6 128 71.1
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 7.9e-46 187.2 128 70.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 7.9e-46 187.2 128 71.9
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.0e-45 186.8 128 70.3
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.8e-45 186.0 128 69.5
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.8e-45 186.0 128 70.3
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 2.3e-45 185.7 128 68.8
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.3e-45 185.7 128 70.3
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.0e-45 185.3 128 68.8
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.9e-45 184.9 128 69.5
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.9e-45 184.9 128 68.8
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 3.9e-45 184.9 121 75.2
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 5.1e-45 184.5 128 68.8
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.7e-45 184.1 128 71.9
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 6.7e-45 184.1 128 69.5
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 8.7e-45 183.7 128 68.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.1e-44 183.3 128 70.3
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.1e-44 183.3 128 71.9
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 2.5e-44 182.2 128 65.6
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.5e-44 182.2 128 68.0
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 2.5e-44 182.2 128 68.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 5.7e-44 181.0 121 71.1
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 7.4e-44 180.6 128 68.8
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 1.3e-43 179.9 121 73.6
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.6e-43 179.5 128 67.2
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.6e-43 179.5 128 68.0
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 6.3e-43 177.6 127 66.9
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 2.4e-42 175.6 128 67.2
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 4.1e-42 174.9 128 64.8
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 5.3e-42 174.5 128 65.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 6.9e-42 174.1 121 68.6
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 9.0e-42 173.7 128 65.6
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.3e-40 169.9 128 61.7
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.2e-40 169.1 121 69.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.9e-39 166.0 126 64.3
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 5.5e-39 164.5 128 60.2
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.6e-38 162.9 127 62.2
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.0e-37 160.2 116 67.2
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.0e-37 158.7 123 60.2
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 5.1e-37 157.9 126 61.1
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.1e-37 157.9 121 63.6
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 5.1e-37 157.9 126 62.7
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 8.8e-37 157.1 120 61.7
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 8.8e-37 157.1 119 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 3.3e-36 155.2 128 59.4
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 9.7e-36 153.7 128 61.7
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 3.1e-34 148.7 132 53.8
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.9e-34 147.5 131 53.4
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.2e-31 138.7 127 54.3
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.0e-29 133.7 134 47.8
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.1e-29 131.3 92 67.4
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 4.1e-26 121.7 127 52.0
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.5e-25 118.2 111 54.1
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.6e-22 109.8 120 49.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.6e-22 109.8 111 53.2
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 4.7e-22 108.2 127 46.5
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 4.1e-18 95.1 72 61.1
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 3.5e-17 92.0 72 59.7
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.1e-14 82.8 49 67.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.2e-11 72.8 63 55.6
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 2.7e-09 65.9 40 67.5


User provided reference genes

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