Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.6e-173 613.2 745 100.0
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 3.5e-154 549.7 579 88.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 2.2e-148 530.4 430 97.4
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 6.0e-138 495.7 746 88.6
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 9.7e-136 488.4 574 85.0
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.1e-134 485.0 573 85.3
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 2.2e-116 424.1 586 84.6
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 2.4e-110 404.1 586 77.3
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.4e-102 378.3 582 72.5
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.7e-63 247.3 582 67.4
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 3.3e-59 234.2 208 66.8
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 7.3e-59 233.0 587 64.6
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.8e-57 228.4 583 65.4
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 4.2e-54 217.2 572 56.5
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 1.5e-48 198.7 205 55.6
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 9.3e-46 189.5 217 97.2
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.9e-43 181.8 207 51.2
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 1.5e-35 155.6 160 50.6
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 3.3e-35 154.5 209 44.0
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 5.6e-35 153.7 206 41.3
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.6e-34 152.1 230 37.8
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 4.8e-34 150.6 271 34.3
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.1e-33 149.4 159 48.4
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.4e-33 149.1 208 43.3
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 3.1e-33 147.9 159 45.9
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 4.0e-33 147.5 165 46.1
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 5.3e-33 147.1 167 47.3
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 9.0e-33 146.4 210 41.9
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 9.0e-33 146.4 213 38.5
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 1.5e-32 145.6 166 44.0
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.0e-32 145.2 206 39.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.4e-32 144.4 170 44.7
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 1.0e-31 142.9 162 45.1
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 1.3e-31 142.5 197 40.1
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.7e-31 142.1 162 43.8
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.7e-31 142.1 268 35.4
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 2.9e-31 141.4 205 40.0
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 3.8e-31 141.0 163 46.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 4.9e-31 140.6 162 45.7
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.4e-30 139.0 159 45.9
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 2.5e-30 138.3 237 37.6
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 5.5e-30 137.1 159 44.0
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 7.1e-30 136.7 214 35.5
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 9.3e-30 136.3 160 41.9
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 1.2e-29 136.0 160 44.4
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 5.7e-27 127.1 170 40.6
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 1.3e-26 125.9 170 38.2
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.6e-26 125.6 197 37.1
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 2.1e-26 125.2 193 33.7
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 2.1e-26 125.2 193 33.7
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 2.8e-26 124.8 193 33.7
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 3.7e-26 124.4 163 41.1
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 6.2e-26 123.6 168 43.5
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 8.2e-26 123.2 156 43.6
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 8.2e-26 123.2 197 37.1
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.1e-25 122.9 134 44.0
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 1.4e-25 122.5 190 36.8
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.8e-25 122.1 217 34.1
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 2.4e-25 121.7 135 45.2
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 3.1e-25 121.3 157 42.0
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 6.9e-25 120.2 160 41.2
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.2e-24 119.4 190 35.8
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 2.6e-24 118.2 129 45.7
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 4.5e-24 117.5 220 37.3
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 5.8e-24 117.1 191 34.6
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.3e-23 115.9 215 33.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 6.5e-23 113.6 221 34.4
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 6.5e-23 113.6 190 34.2
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 6.5e-23 113.6 188 36.2
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 8.4e-23 113.2 160 38.1
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 3.2e-22 111.3 138 42.8
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.2e-22 110.9 183 32.8
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 4.2e-22 110.9 134 40.3
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 9.3e-22 109.8 174 38.5
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 3.5e-21 107.8 194 32.5
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 4.6e-21 107.5 134 38.1
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 7.9e-21 106.7 179 37.4
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 7.9e-21 106.7 181 32.0
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 1.0e-20 106.3 138 39.1
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 3.9e-20 104.4 188 32.4
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 5.1e-20 104.0 211 31.8
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 9.7e-19 99.8 215 28.8
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 9.7e-19 99.8 129 41.1
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.3e-18 99.4 129 42.6
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 5.3e-17 94.0 45 93.3
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 2.3e-12 78.6 132 31.1
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 3.9e-12 77.8 128 35.2
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 6.7e-12 77.0 74 51.4
A09p41780 Brassica napus HOM05D007426 ORTHO05D009167 3.1e-09 68.2 41 85.4
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 1.1e-06 59.7 126 32.5
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 2.5e-06 58.5 129 27.9
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 9.4e-06 56.6 116 33.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 9.4e-06 56.6 189 22.8


User provided reference genes

Program Settings