Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 3087.4 1566 100.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 3056.2 1572 98.7
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2983.7 1571 96.2
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2956.8 1573 95.4
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2882.4 1585 93.0
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2749.2 1573 90.0
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2736.8 1575 89.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2736.8 1608 87.4
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2730.3 1574 88.8
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2729.9 1576 88.9
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2720.7 1571 88.8
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2679.8 1571 87.7
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2672.5 1570 87.5
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2645.9 1603 84.7
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2642.8 1625 83.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2642.1 1629 83.4
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2637.4 1600 84.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2617.4 1619 83.8
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2531.1 1627 80.5
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2459.5 1615 78.6
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1583 73.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2307.7 1609 73.3
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2296.9 1604 73.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2292.3 1606 73.3
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2288.8 1618 71.7
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2287.7 1612 72.0
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2280.4 1604 73.2
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2280.0 1612 72.0
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2269.6 1614 72.1
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2255.7 1615 71.8
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2245.7 1613 70.9
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2242.6 1624 70.9
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2238.0 1617 70.5
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2236.1 1608 70.5
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1625 70.4
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2225.3 1624 69.8
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2214.1 1619 69.7
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2211.8 1615 70.1
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2208.3 1611 69.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2204.9 1623 69.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1597 69.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2177.1 1616 68.7
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1616 68.3
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2174.4 1585 70.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2170.6 1612 68.8
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2169.4 1566 70.7
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2165.6 1636 67.2
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2161.7 1614 68.1
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2157.1 1620 68.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2155.9 1606 68.1
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2146.7 1618 68.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2144.4 1604 68.8
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1610 68.0
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2134.0 1609 68.4
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2132.8 1634 67.7
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2130.5 1604 68.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2125.1 1648 66.7
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2121.7 1528 70.7
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2119.4 1613 66.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2118.2 1616 65.9
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2115.9 1600 67.1
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2109.3 1617 65.4
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2107.8 1615 66.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2107.4 1596 67.4
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2105.1 1595 66.9
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2103.2 1599 67.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2102.4 1618 66.9
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2097.0 1624 66.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2097.0 1518 70.3
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2089.3 1924 59.6
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2086.6 1629 66.2
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2086.6 1602 66.5
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2083.5 1442 73.5
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2075.4 1603 66.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2060.8 1574 66.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2056.6 1611 65.1
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2051.9 1598 66.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2050.0 1661 64.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2031.5 1420 72.4
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2005.7 1516 67.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1956.0 1590 63.2
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1952.2 1592 62.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1942.5 1528 65.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1903.3 1465 68.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1890.2 1961 53.2
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1869.4 1596 60.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1858.6 1608 60.3
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1857.4 1482 64.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1849.3 1565 62.9
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1847.0 1404 68.3
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1830.1 1629 60.1
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1808.1 1558 60.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1807.3 1554 60.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1593.9 1111 72.6
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1588.2 1531 56.8
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1571.2 1218 66.3
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1422.5 1417 55.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1418.7 983 72.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1403.7 1371 56.6
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1379.4 979 70.8
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1358.2 1614 46.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1301.6 1627 45.3
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1284.6 1203 55.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1279.6 1555 45.5
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1161.0 1080 56.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1099.3 739 74.3
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 2.4e-309 1066.2 1561 43.2
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.6e-289 1000.3 520 97.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 8.8e-256 888.3 641 71.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 4.7e-233 812.8 611 68.9
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 5.2e-224 782.7 540 73.7
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.8e-216 757.7 664 60.8
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.1e-213 748.4 617 62.1
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.8e-204 715.7 506 70.8
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.1e-201 707.6 577 63.1
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-187 661.8 590 59.5
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-186 657.5 597 58.6
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.9e-158 564.3 639 50.7
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 4.5e-151 540.4 564 52.1
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 5.5e-149 533.5 514 56.6
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.6e-148 531.9 555 53.5
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 7.4e-146 523.1 353 73.1
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 2.2e-137 495.0 367 70.8
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.8e-136 491.9 331 77.3
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 2.5e-133 481.5 476 54.4
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.1e-128 464.5 484 49.8
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 6.5e-126 456.8 511 50.3
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-125 456.1 413 59.3
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.5e-119 434.5 313 71.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 4.5e-119 434.1 291 77.3
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.3e-109 400.2 365 58.1
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.6e-106 391.7 316 64.9
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.8e-106 390.6 408 52.9
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.1e-101 376.3 316 63.0
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.5e-98 365.9 236 75.8
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-90 339.0 378 48.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 4.5e-74 284.6 242 58.3
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 6.0e-71 274.2 217 64.5
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 9.9e-66 256.9 155 78.7
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.4e-64 252.3 152 79.6
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 7.6e-58 230.7 142 77.5
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.4e-50 205.3 142 64.8
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-48 200.3 147 70.7
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.7e-46 191.0 213 52.1
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.5e-45 189.1 123 81.3
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 8.2e-44 184.1 130 76.9
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-36 157.5 144 62.5
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-36 157.5 144 62.5
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-36 157.5 144 62.5
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-36 157.5 144 62.5
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-36 157.5 144 62.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-35 157.1 144 61.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 4.1e-35 155.2 144 61.8
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.9e-35 154.5 144 61.8
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.7e-31 142.5 93 74.2
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.4e-30 140.2 94 71.3
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 5.2e-30 138.3 94 67.0
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 6.7e-30 137.9 85 76.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.2e-28 131.0 137 50.4
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-27 130.6 131 58.8
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-27 129.0 131 58.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 7.7e-26 124.4 96 63.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.8e-20 105.9 77 63.6
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.1e-19 102.4 106 54.7
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 7.7e-18 97.8 88 54.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 1.3e-17 97.1 88 53.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.9e-17 95.9 75 60.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.7e-15 89.4 82 57.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 6.8e-14 84.7 56 73.2
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 9.8e-13 80.9 54 70.4
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.4e-11 77.0 48 66.7
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.0e-09 70.9 54 66.7
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.3e-09 69.7 55 58.2
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 7.2e-08 64.7 50 62.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.0e-07 61.2 44 65.9


User provided reference genes

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