Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40570 Brassica napus HOM05D000252 ORTHO05D040258 4.9e-35 150.6 76 100.0
BraA09t39553Z Brassica rapa HOM05D000252 ORTHO05D040258 3.2e-34 147.9 75 98.7
C07p55690 Brassica napus HOM05D000252 ORTHO05D003750 2.1e-14 82.0 43 88.4
BolC7t46050H Brassica oleracea HOM05D000252 ORTHO05D003750 2.1e-14 82.0 43 88.4
BcaNung01622 Brassica carinata HOM05D000252 ORTHO05D003750 2.8e-14 81.6 43 86.0
BcaC09g50539 Brassica carinata HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
A01p19220 Brassica napus HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
C01p24150 Brassica napus HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
BolC1t02372H Brassica oleracea HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
BraA01t01864Z Brassica rapa HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
Thhalv10025479m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
Sp7g25730 Schrenkiella parvula HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
THA.LOC104799962 Tarenaya hassleriana HOM05D000252 ORTHO05D003750 6.2e-14 80.5 43 83.7
BraA03t14817Z Brassica rapa HOM05D000252 ORTHO05D003750 8.1e-14 80.1 43 86.0
AL7G24890 Arabidopsis lyrata HOM05D000252 ORTHO05D003750 1.1e-13 79.7 43 83.7
AT4G27760 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 1.1e-13 79.7 71 59.2
BcaC03g17025 Brassica carinata HOM05D000252 ORTHO05D003750 1.1e-13 79.7 41 90.2
BcaC06g32666 Brassica carinata HOM05D000252 ORTHO05D003750 1.1e-13 79.7 43 83.7
A03p57490 Brassica napus HOM05D000252 ORTHO05D003750 1.1e-13 79.7 43 83.7
C02p49380 Brassica napus HOM05D000252 ORTHO05D003750 1.1e-13 79.7 41 90.2
THA.LOC104811907 Tarenaya hassleriana HOM05D000252 ORTHO05D003750 1.4e-13 79.3 41 85.4
Carub.0007s1305 Capsella rubella HOM05D000252 ORTHO05D003750 1.8e-13 79.0 43 83.7
CARHR235490 Cardamine hirsuta HOM05D000252 ORTHO05D003750 2.4e-13 78.6 43 81.4
CARHR266110 Cardamine hirsuta HOM05D000252 ORTHO05D003750 4.0e-13 77.8 43 81.4
Aa31LG3G9370 Aethionema arabicum HOM05D000252 ORTHO05D003750 5.2e-13 77.4 43 81.4
Aa31LG3G9380 Aethionema arabicum HOM05D000252 ORTHO05D003750 5.2e-13 77.4 43 81.4
Aa31LG3G2830 Aethionema arabicum HOM05D000252 ORTHO05D003750 8.9e-13 76.6 43 79.1
FvH4_5g31670 Fragaria vesca HOM05D000252 ORTHO05D003750 8.9e-13 76.6 41 82.9
FAN04G2881 Fragaria x ananassa HOM05D000252 ORTHO05D003750 8.9e-13 76.6 41 82.9
FAN08G1937 Fragaria x ananassa HOM05D000252 ORTHO05D003750 8.9e-13 76.6 41 82.9
FAN18G0687 Fragaria x ananassa HOM05D000252 ORTHO05D003750 8.9e-13 76.6 41 82.9
TWI15G0890 Tripterygium wilfordii HOM05D000252 ORTHO05D003750 8.9e-13 76.6 41 82.9
Atru.chr9.356 Acer truncatum HOM05D000252 ORTHO05D003750 1.2e-12 76.3 71 57.7
Thhalv10013852m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 1.2e-12 76.3 43 79.1
Cpa.g.sc111.32 Carica papaya HOM05D000252 ORTHO05D003750 1.5e-12 75.9 71 57.7
Carub.0008s1329 Capsella rubella HOM05D000252 ORTHO05D003750 2.0e-12 75.5 43 79.1
RcHm_v2.0_Chr6g0266921 Rosa chinensis HOM05D000252 ORTHO05D003750 2.0e-12 75.5 41 82.9
FAN04G1645 Fragaria x ananassa HOM05D000038 ORTHO05D000423 2.6e-12 75.1 41 80.5
MD14G1244800 Malus domestica HOM05D000252 ORTHO05D003750 2.6e-12 75.1 41 80.5
RcHm_v2.0_Chr7g0227471 Rosa chinensis HOM05D000252 ORTHO05D003750 2.6e-12 75.1 41 80.5
MD02G1050600 Malus domestica HOM05D000252 ORTHO05D003750 3.4e-12 74.7 41 80.5
MD02G1208700 Malus domestica HOM05D000252 ORTHO05D003750 3.4e-12 74.7 41 80.5
MD06G1238500 Malus domestica HOM05D000252 ORTHO05D003750 3.4e-12 74.7 41 80.5
Peaxi162Scf00171g00341 Petunia axillaris HOM05D000252 ORTHO05D003750 4.4e-12 74.3 71 56.3
TWI81G0629 Tripterygium wilfordii HOM05D000252 ORTHO05D003750 4.4e-12 74.3 41 80.5
Haze_18427 Corylus avellana HOM05D000252 ORTHO05D003750 5.8e-12 73.9 71 57.7
FvH4_5g31671 Fragaria vesca HOM05D000252 ORTHO05D003750 5.8e-12 73.9 41 78.0
Ah.14g085740 Amaranthus hybridus HOM05D000252 ORTHO05D003750 7.6e-12 73.6 73 56.2
Manes.16G063200 Manihot esculenta HOM05D000252 ORTHO05D003750 7.6e-12 73.6 71 56.3
Nitab4.5_0004612g0050 Nicotiana tabacum HOM05D000252 ORTHO05D003750 7.6e-12 73.6 71 56.3
GSVIVG01008620001 Vitis vinifera HOM05D000252 ORTHO05D003750 7.6e-12 73.6 41 78.0
Cfa017789 Carpinus fangiana HOM05D000252 ORTHO05D003750 9.9e-12 73.2 71 57.7
AL8G27720 Arabidopsis lyrata HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 76.7
AT5G53090 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 76.7
A02p11300 Brassica napus HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 74.4
C02p18680 Brassica napus HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 74.4
BolC2t08013H Brassica oleracea HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 74.4
BraA02t06192Z Brassica rapa HOM05D000252 ORTHO05D003750 1.3e-11 72.8 43 74.4
Lj5C167G0 Lonicera japonica HOM05D000252 ORTHO05D003750 1.3e-11 72.8 41 80.5
Nitab4.5_0000782g0210 Nicotiana tabacum HOM05D000252 ORTHO05D003750 1.3e-11 72.8 71 54.9
Sed0008072 Sechium edule HOM05D000252 ORTHO05D003750 1.3e-11 72.8 41 78.0
CANSAT78G0333 Cannabis sativa HOM05D000252 ORTHO05D003750 1.7e-11 72.4 41 78.0
Ciclev10020565m.g Citrus clementina HOM05D000252 ORTHO05D003750 1.7e-11 72.4 43 74.4
Eucgr.I02747 Eucalyptus grandis HOM05D000252 ORTHO05D003750 1.7e-11 72.4 41 78.0
MD16G1170300 Malus domestica HOM05D000252 ORTHO05D003750 1.7e-11 72.4 41 78.0
PGR142G1142 Punica granatum HOM05D000252 ORTHO05D003750 1.7e-11 72.4 71 56.3
Sp6g15260 Schrenkiella parvula HOM05D000252 ORTHO05D003750 1.7e-11 72.4 43 74.4
Sc19g0001440 Simmondsia chinensis HOM05D000252 ORTHO05D003750 1.7e-11 72.4 41 75.6
Nn8g40351 Nelumbo nucifera HOM05D000252 ORTHO05D003750 2.2e-11 72.0 41 78.0
Prupe.5G242400 Prunus persica HOM05D000252 ORTHO05D003750 2.2e-11 72.0 41 78.0
PGSC0003DMG400010157 Solanum tuberosum HOM05D000252 ORTHO05D003750 2.2e-11 72.0 71 54.9
TAR629G1058 Trochodendron aralioides HOM05D000252 ORTHO05D003750 2.2e-11 72.0 41 78.0
CSS0037678 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D003750 3.8e-11 71.2 74 52.7
AUR62042162 Chenopodium quinoa HOM05D000252 ORTHO05D003750 3.8e-11 71.2 41 78.0
BcaB05g22008 Brassica carinata HOM05D000252 ORTHO05D003750 4.9e-11 70.9 43 72.1
BcaB05g22011 Brassica carinata HOM05D000252 ORTHO05D003750 4.9e-11 70.9 43 72.1
BcaC03g14457 Brassica carinata HOM05D000252 ORTHO05D003750 4.9e-11 70.9 43 72.1
Solyc03g098460.3 Solanum lycopersicum HOM05D000252 ORTHO05D003750 4.9e-11 70.9 71 54.9
Sopen03g029200 Solanum pennellii HOM05D000252 ORTHO05D003750 4.9e-11 70.9 71 54.9
CAN.G929.31 Capsicum annuum HOM05D000252 ORTHO05D003750 6.4e-11 70.5 71 53.5
AUR62022404 Chenopodium quinoa HOM05D000252 ORTHO05D003750 6.4e-11 70.5 70 55.7
ClCG04G012600 Citrullus lanatus HOM05D000252 ORTHO05D003750 6.4e-11 70.5 41 75.6
MELO3C001948.2 Cucumis melo HOM05D000252 ORTHO05D003750 6.4e-11 70.5 41 75.6
CsaV3_1G005100 Cucumis sativus L. HOM05D000252 ORTHO05D003750 6.4e-11 70.5 41 75.6
Rhsim12G0136800 Rhododendron simsii HOM05D000252 ORTHO05D003750 6.4e-11 70.5 41 75.6
vmacro16393 Vaccinium macrocarpon HOM05D000252 ORTHO05D003750 6.4e-11 70.5 41 75.6
Actinidia18874 Actinidia chinensis HOM05D000252 ORTHO05D003750 8.4e-11 70.1 41 75.6
CiPaw.16G072200 Carya illinoinensis HOM05D000252 ORTHO05D003750 8.4e-11 70.1 41 75.6
HanXRQChr17g0545691 Helianthus annuus HOM05D000252 ORTHO05D003750 8.4e-11 70.1 41 70.7
CAN.G1635.19 Capsicum annuum HOM05D000252 ORTHO05D003750 1.4e-10 69.3 41 73.2
ECA232G1736 Erigeron canadensis HOM05D000252 ORTHO05D003750 1.4e-10 69.3 73 50.7
Migut.D02061 Erythranthe guttata HOM05D000252 ORTHO05D003750 1.9e-10 68.9 41 73.2
Lsat_1_v5_gn_0_10320 Lactuca sativa HOM05D000252 ORTHO05D003750 1.9e-10 68.9 41 70.7
MBI06_g12841_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D003750 1.9e-10 68.9 41 75.6
Oeu016048.1 Olea europaea HOM05D000252 ORTHO05D003750 2.4e-10 68.6 41 70.7
Oeu034435.1 Olea europaea HOM05D000252 ORTHO05D003750 2.4e-10 68.6 41 68.3
MSTRG.4321 Avicennia marina HOM05D000252 ORTHO05D003750 3.2e-10 68.2 41 70.7
Potri.015G028900 Populus trichocarpa HOM05D000252 ORTHO05D003750 3.2e-10 68.2 41 70.7
Sabra15G0024000 Salix brachista HOM05D000252 ORTHO05D003750 3.2e-10 68.2 41 70.7
unitig_0.g29 Utricularia gibba HOM05D002770 ORTHO05D003750 4.1e-10 67.8 41 73.2
Carub.0008s1330 Capsella rubella HOM05D000252 ORTHO05D003750 5.4e-10 67.4 43 74.4
Aqoxy3G04245 Aquilegia oxysepala HOM05D000252 ORTHO05D003750 7.1e-10 67.0 41 68.3
ATR0568G038 Amborella trichopoda HOM05D000252 ORTHO05D003750 9.2e-10 66.6 41 65.9
EL10Ac1g01582 Beta vulgaris HOM05D000252 ORTHO05D003750 9.2e-10 66.6 41 68.3
Cc04_g08590 Coffea canephora HOM05D000252 ORTHO05D003750 9.2e-10 66.6 41 68.3
PSO063G3479 Papaver somniferum HOM05D000252 ORTHO05D003750 1.2e-09 66.2 41 75.6
Sp6g15270 Schrenkiella parvula HOM05D000252 ORTHO05D003750 1.2e-09 66.2 43 72.1
AT5G53100 Arabidopsis thaliana HOM05D000252 ORTHO05D003750 1.6e-09 65.9 45 68.9
Thhalv10013865m.g Eutrema salsugineum HOM05D000252 ORTHO05D003750 1.6e-09 65.9 43 72.1
SGA_v2.0_scaffold1368G53928 Striga asiatica HOM05D000252 ORTHO05D003750 1.6e-09 65.9 41 68.3
SGA_v2.0_scaffold164G38109 Striga asiatica HOM05D000252 ORTHO05D003750 2.1e-09 65.5 41 68.3
SGA_v2.0_scaffold164G38113 Striga asiatica HOM05D000252 ORTHO05D003750 2.1e-09 65.5 41 68.3
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 2.1e-09 65.5 41 68.3
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 2.1e-09 65.5 41 68.3
SalBow8G5481 Salvia bowleyana HOM05D000252 ORTHO05D003750 2.7e-09 65.1 67 53.7
AL8G27730 Arabidopsis lyrata HOM05D000252 ORTHO05D003750 4.6e-09 64.3 45 66.7
Dinv02326 Davidia involucrata HOM05D000252 ORTHO05D003750 4.6e-09 64.3 41 70.7
PSO782G5092 Papaver somniferum HOM05D000252 ORTHO05D003750 4.6e-09 64.3 41 73.2
QL10p034566 Quercus lobata HOM05D000252 ORTHO05D003750 1.3e-08 62.8 75 50.7
CARHR266120 Cardamine hirsuta HOM05D000252 ORTHO05D003750 1.7e-08 62.4 45 66.7
Phvul.004G141700 Phaseolus vulgaris HOM05D000252 ORTHO05D003750 1.7e-08 62.4 41 70.7
VMungo0464G0299 Vigna mungo HOM05D000252 ORTHO05D003750 1.7e-08 62.4 41 70.7
SEGI_29470 Sequoiadendron giganteum HOM05D000252 ORTHO05D003750 2.3e-08 62.0 41 63.4
MSTRG.9711 Avicennia marina HOM05D000252 ORTHO05D003750 3.0e-08 61.6 41 65.9
A03p15370 Brassica napus HOM05D000223 ORTHO05D003750 5.1e-08 60.8 45 66.7
DCAR_023253 Daucus carota HOM05D000252 ORTHO05D003750 5.1e-08 60.8 79 45.6
Glyma.09G166100 Glycine max HOM05D000252 ORTHO05D003750 5.1e-08 60.8 41 68.3
Glyma.16G216200 Glycine max HOM05D000252 ORTHO05D003750 5.1e-08 60.8 41 68.3
Lalb_Chr14g0370331 Lupinus albus HOM05D000252 ORTHO05D003750 5.1e-08 60.8 45 64.4
BraA03t10830Z Brassica rapa HOM05D000252 ORTHO05D003750 1.5e-07 59.3 45 64.4
TPR.G24058 Trifolium pratense HOM05D000252 ORTHO05D003750 1.5e-07 59.3 45 62.2
arahy.Tifrunner.gnm1.ann1.GR2Q8K Arachis hypogaea HOM05D000252 ORTHO05D003750 1.9e-07 58.9 41 70.7
Lalb_Chr24g0398501 Lupinus albus HOM05D000252 ORTHO05D003750 1.9e-07 58.9 45 60.0
Lj2g0009530 Lotus japonicus HOM05D000252 ORTHO05D003750 2.5e-07 58.5 45 60.0
BcaC01g06222 Brassica carinata HOM05D000223 ORTHO05D003750 3.3e-07 58.2 45 64.4
C03p17970 Brassica napus HOM05D000223 ORTHO05D003750 3.3e-07 58.2 45 64.4
BolC3t14203H Brassica oleracea HOM05D000223 ORTHO05D003750 3.3e-07 58.2 45 64.4
Gohir.D07G125900 Gossypium hirsutum HOM05D000252 ORTHO05D003750 3.3e-07 58.2 41 70.7
Gorai.001G135900 Gossypium raimondii HOM05D000252 ORTHO05D003750 3.3e-07 58.2 41 70.7
arahy.Tifrunner.gnm1.ann1.KRCN8E Arachis hypogaea HOM05D000252 ORTHO05D003750 5.6e-07 57.4 41 68.3
Psat1g120600 Pisum sativum HOM05D000252 ORTHO05D003750 5.6e-07 57.4 45 60.0
Thecc.03G072500 Theobroma cacao HOM05D000252 ORTHO05D003750 5.6e-07 57.4 41 68.3
Duzib205G1277 Durio zibethinus HOM05D000252 ORTHO05D003750 7.3e-07 57.0 41 68.3
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.2e-06 56.2 63 54.0
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 1.2e-06 56.2 35 80.0
Zm00001eb229940 Zea mays HOM05D000252 ORTHO05D003750 1.2e-06 56.2 41 68.3
Os02g0116500 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D003750 2.8e-06 55.1 41 68.3
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 6.2e-06 53.9 35 77.1
Gohir.A04G141300 Gossypium hirsutum HOM05D000252 ORTHO05D003750 6.2e-06 53.9 41 65.9
Gohir.D04G187600 Gossypium hirsutum HOM05D000252 ORTHO05D003750 6.2e-06 53.9 41 65.9
Gorai.012G180800 Gossypium raimondii HOM05D000252 ORTHO05D003750 6.2e-06 53.9 41 65.9
Zm00001eb209490 Zea mays HOM05D000252 ORTHO05D003750 6.2e-06 53.9 41 63.4


User provided reference genes

Program Settings