Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 1.6e-21 105.1 52 100.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.3e-20 101.3 50 100.0
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 2.2e-18 94.7 52 90.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-18 94.7 52 90.4
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-17 91.3 52 86.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-17 90.9 50 90.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-16 88.6 51 90.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.6e-16 88.6 50 86.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-16 88.2 50 88.0
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.0e-16 88.2 50 88.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-16 87.8 47 89.4
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-16 87.0 51 88.2
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.5e-16 87.0 51 88.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.9e-16 86.7 51 86.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 5.9e-16 86.7 50 84.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-15 85.1 48 87.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-15 84.0 51 84.3
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.5e-14 82.0 51 82.4
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-14 81.3 50 78.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-14 80.1 50 78.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-13 79.0 50 76.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-13 78.2 44 86.4
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.7e-13 77.8 50 76.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 3.4e-11 70.9 49 69.4
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.8e-11 69.3 49 69.4
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.4e-09 65.5 51 58.8
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.8e-09 65.1 50 64.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.1e-09 64.3 49 59.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 5.4e-09 63.5 50 66.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.4e-09 63.5 50 64.0
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.2e-08 62.4 47 59.6
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-08 62.4 50 62.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.6e-08 62.0 51 54.9
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.6e-08 62.0 50 56.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.6e-08 62.0 51 51.0
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.7e-08 61.2 49 63.3
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-08 60.5 50 60.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.5e-08 60.5 50 60.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 4.5e-08 60.5 51 47.1
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 4.5e-08 60.5 50 50.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 4.5e-08 60.5 50 54.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.9e-08 60.1 50 60.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.9e-08 60.1 51 51.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.9e-08 60.1 50 54.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.9e-08 60.1 50 56.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.0e-07 59.3 50 54.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.0e-07 59.3 51 54.9
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.3e-07 58.9 50 54.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.7e-07 58.5 50 50.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-07 58.5 50 50.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-07 58.5 50 50.0
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-07 58.5 50 50.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.2e-07 58.2 50 60.0
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.2e-07 58.2 50 52.0
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-07 57.8 52 59.6
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.9e-07 57.8 50 48.0
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.9e-07 57.8 50 50.0
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 58.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 48.0
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 50.0
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 50.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 50.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 3.8e-07 57.4 50 50.0
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 5.0e-07 57.0 50 50.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.0e-07 57.0 50 48.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.5e-07 56.6 47 53.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 6.5e-07 56.6 49 51.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 8.5e-07 56.2 50 48.0
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.1e-06 55.8 47 55.3
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.5e-06 55.5 52 46.2
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.9e-06 55.1 50 46.0
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.5e-06 54.7 47 48.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.5e-06 54.7 50 50.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.5e-06 54.7 51 51.0
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.5e-06 54.7 50 46.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-06 54.3 49 59.2
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 4.2e-06 53.9 50 52.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 5.5e-06 53.5 50 46.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 5.5e-06 53.5 50 48.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.5e-06 53.5 52 51.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.5e-06 53.5 51 45.1
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 5.5e-06 53.5 51 43.1
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 7.2e-06 53.1 46 47.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.5e-06 52.8 50 44.0
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.5e-06 52.8 50 46.0


User provided reference genes

Program Settings