Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 8.7e-276 953.0 469 100.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-271 938.3 469 98.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 7.2e-262 906.7 469 95.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-237 825.9 468 88.5
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 7.5e-235 817.0 470 85.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-234 815.8 470 85.5
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.7e-234 814.7 470 86.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 8.2e-234 813.5 470 85.1
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-233 813.1 470 85.1
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-233 813.1 470 85.1
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-233 812.8 469 84.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.8e-233 812.4 472 85.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-233 812.0 470 84.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 6.5e-231 803.9 469 84.4
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-230 803.1 470 83.6
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.0e-228 796.6 470 83.4
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-228 795.8 469 86.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-224 781.6 443 87.8
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.8e-219 763.5 469 81.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.4e-209 731.1 468 76.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 6.0e-200 701.0 470 76.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 7.8e-200 700.7 448 79.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-199 698.4 389 90.5
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.3e-186 656.8 468 67.3
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.1e-180 635.6 467 68.1
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-177 625.9 448 74.3
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.1e-176 622.9 466 66.7
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.6e-176 621.7 467 66.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-174 616.3 467 65.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.6e-174 614.8 467 65.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 8.1e-173 610.9 469 62.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-172 609.8 467 64.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 6.9e-172 607.8 460 63.9
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 9.0e-172 607.4 467 64.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 9.0e-172 607.4 468 62.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.5e-171 606.7 460 63.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 2.0e-171 606.3 460 63.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.4e-171 605.5 460 63.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.7e-170 603.2 464 63.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.7e-170 603.2 468 61.8
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.2e-170 602.8 458 63.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 8.4e-170 600.9 460 63.0
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.1e-169 600.5 464 62.3
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.7e-168 595.9 460 62.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.5e-168 595.5 460 62.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 7.9e-168 594.3 460 62.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.8e-167 593.2 460 63.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 8.7e-167 590.9 459 62.7
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.7e-167 590.9 460 61.3
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-166 590.1 491 61.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.5e-166 589.3 460 62.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 4.3e-166 588.6 467 60.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 5.6e-166 588.2 468 61.1
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 7.4e-166 587.8 438 63.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 7.4e-166 587.8 468 60.5
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.6e-166 587.4 489 59.5
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 8.1e-165 584.3 467 60.4
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.1e-165 584.3 467 60.6
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.8e-164 583.2 460 60.7
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.8e-164 583.2 468 60.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.4e-164 582.8 458 62.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-164 582.4 439 64.5
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.9e-164 581.3 460 61.5
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-163 579.7 439 64.9
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.0e-163 579.7 461 61.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 9.9e-163 577.4 469 60.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-162 576.6 419 67.3
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.9e-161 573.2 470 59.4
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.9e-161 573.2 472 59.3
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.5e-161 572.8 459 60.6
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.5e-161 572.8 468 59.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.2e-161 572.4 475 59.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.2e-161 572.4 465 59.1
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.6e-160 570.1 468 59.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.1e-160 569.7 464 59.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.7e-160 569.3 467 58.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.7e-160 569.3 470 59.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 4.6e-160 568.5 458 60.7
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.0e-159 567.4 472 58.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.0e-159 567.4 458 60.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.3e-159 567.0 461 60.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.3e-159 567.0 461 59.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.3e-159 566.2 460 58.9
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.1e-159 565.1 461 59.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.9e-158 563.1 472 58.9
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 2.5e-158 562.8 462 58.4
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.3e-158 562.4 465 59.6
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.6e-158 561.6 469 60.6
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 5.6e-158 561.6 458 59.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.4e-156 556.2 460 59.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.4e-156 556.2 460 60.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.4e-156 556.2 460 59.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.0e-156 555.4 462 58.7
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.5e-155 553.5 438 62.3
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.0e-155 553.1 433 62.1
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.8e-155 551.6 469 57.4
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.7e-152 542.7 412 62.4
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.3e-151 539.7 437 60.4
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 6.3e-149 531.6 463 55.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.6e-147 526.2 461 56.8
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.9e-147 525.0 460 55.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 7.7e-147 524.6 468 55.8
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.4e-145 520.4 460 55.2
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.0e-143 514.2 449 55.9
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 5.3e-140 501.9 435 57.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.9e-138 496.1 440 54.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.1e-137 494.2 467 52.7
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.2e-137 492.7 365 66.6
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.8e-135 486.9 471 53.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.7e-134 481.9 460 51.3
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.3e-130 470.7 467 50.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.4e-129 467.2 479 53.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.9e-129 466.8 469 53.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 5.5e-129 465.3 491 48.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.1e-128 461.8 438 52.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 7.4e-126 454.9 452 49.6
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.7e-125 452.6 344 64.0
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.4e-124 449.9 359 60.4
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.4e-116 423.3 509 46.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.4e-108 395.6 440 48.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.7e-104 382.5 503 43.1
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 4.5e-99 365.9 461 42.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.7e-93 346.3 227 78.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.7e-88 329.3 435 41.4
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-81 307.4 317 58.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-77 292.7 248 59.7
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 4.9e-77 292.7 429 37.3
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-68 264.2 192 66.1
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 3.2e-68 263.5 192 66.1
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 7.8e-67 258.8 189 66.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.6e-65 251.9 268 49.3
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-58 229.6 225 55.6
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-56 224.2 222 55.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.9e-55 219.2 197 55.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-55 219.2 389 39.1
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-52 211.5 149 64.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 7.1e-52 209.1 145 78.6
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-50 204.9 145 76.6
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 7.6e-38 162.5 155 52.9
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-37 161.8 178 51.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-34 151.8 77 90.9
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.7e-34 149.1 117 63.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 8.7e-34 149.1 77 89.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.3e-32 145.2 111 61.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 8.2e-32 142.5 214 45.8
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.1e-31 140.6 115 67.0
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 3.1e-31 140.6 129 60.5
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 9.0e-31 139.0 76 76.3
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 4.5e-30 136.7 103 68.9
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 5.9e-30 136.3 133 55.6
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-29 133.7 81 80.2
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-27 125.9 214 41.6
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.4e-22 110.5 56 87.5
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.4e-22 110.5 140 44.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.2e-21 107.8 93 59.1
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-21 107.1 218 39.9
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.9e-20 104.8 86 62.8
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-19 102.1 106 50.9
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 6.1e-19 99.8 50 98.0
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-17 94.7 100 51.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.6e-17 94.4 57 66.7
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 1.8e-15 88.2 50 88.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 9.1e-15 85.9 188 38.8
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.0e-13 82.4 116 40.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.9e-13 80.9 78 48.7
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 3.8e-13 80.5 42 92.9
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 5.0e-13 80.1 56 60.7
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 231 26.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.6e-11 73.9 194 27.8
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 4.0e-10 70.5 56 67.9
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.4e-09 67.0 149 30.9
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.5e-09 66.2 178 27.0
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-07 61.6 53 56.6
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 7.0e-07 59.7 53 52.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.0e-06 58.2 40 65.0
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.7e-06 57.8 63 41.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-06 57.8 63 41.3
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.9e-06 56.6 63 41.3


User provided reference genes

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