Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 7.0e-181 637.1 312 100.0
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-180 635.6 312 99.0
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.1e-165 583.9 313 91.4
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 5.2e-160 567.8 312 91.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.5e-154 548.9 310 86.1
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 5.6e-154 547.7 301 91.0
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-152 543.5 309 84.5
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.5e-151 539.7 309 83.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-149 531.6 284 91.9
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-147 526.9 305 84.3
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-146 523.5 305 83.6
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-145 520.0 310 80.6
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.9e-143 510.4 310 78.4
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-138 496.1 304 80.9
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.6e-138 493.8 310 78.1
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-137 491.9 310 76.5
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.8e-137 491.5 310 76.1
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.0e-136 488.4 309 75.1
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 5.3e-136 488.0 310 76.5
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-135 486.9 309 75.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.6e-135 485.7 310 76.1
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 7.6e-135 484.2 310 75.8
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-134 483.8 309 75.7
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-134 483.4 310 75.5
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.2e-134 482.6 312 74.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 3.8e-134 481.9 309 74.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.2e-133 478.8 308 74.7
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-132 476.5 309 73.8
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.7e-132 475.7 309 73.5
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 3.3e-130 468.8 297 75.4
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 5.7e-130 468.0 297 75.8
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.1e-125 453.8 309 70.6
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.9e-125 453.0 312 68.6
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-123 445.3 351 66.1
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 5.1e-123 444.9 311 68.5
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.2e-121 439.5 312 68.6
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-121 438.7 307 68.1
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.2e-121 437.6 309 67.6
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-120 436.8 307 67.8
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-120 436.8 307 67.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.1e-120 435.3 305 68.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.0e-118 428.3 285 71.6
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-115 419.1 309 67.6
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-115 418.7 307 66.1
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-92 344.0 214 76.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-92 344.0 214 76.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 3.1e-88 329.3 300 53.7
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.6e-87 327.0 301 53.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.3e-86 323.9 297 53.5
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.2e-86 323.2 298 53.0
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 3.8e-86 322.4 303 52.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 5.0e-86 322.0 300 53.0
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 8.5e-86 321.2 296 52.4
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.1e-85 320.9 303 52.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.9e-85 320.1 293 53.6
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.5e-85 319.7 302 52.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 4.2e-85 318.9 300 53.0
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.5e-85 318.5 223 72.6
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 7.2e-85 318.2 300 52.7
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 9.5e-85 317.8 301 51.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-84 317.4 254 61.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.2e-84 317.4 300 52.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 1.6e-84 317.0 302 52.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-84 316.6 300 54.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.8e-84 316.2 301 51.5
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.6e-84 315.8 307 51.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.7e-84 315.5 293 51.9
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 4.7e-84 315.5 293 53.6
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.7e-84 315.5 299 52.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 8.0e-84 314.7 301 52.5
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.4e-83 313.9 308 51.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.8e-83 313.5 305 50.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.8e-83 313.5 308 52.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.3e-83 313.2 304 51.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.3e-83 313.2 293 52.9
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 3.0e-83 312.8 303 52.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 3.0e-83 312.8 293 51.9
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.0e-83 312.4 301 51.8
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 6.8e-83 311.6 295 52.9
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 8.8e-83 311.2 300 53.3
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 8.8e-83 311.2 292 51.4
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.2e-82 310.8 296 51.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.5e-82 310.5 282 53.9
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.5e-82 310.5 311 50.5
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.6e-82 309.7 307 50.8
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.6e-82 309.7 293 50.9
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.6e-82 309.7 300 50.0
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.6e-82 309.7 293 51.5
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.4e-82 309.3 300 52.0
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 3.4e-82 309.3 300 51.3
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 3.4e-82 309.3 297 51.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.4e-82 308.9 298 50.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 5.7e-82 308.5 301 50.8
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 7.5e-82 308.1 300 50.3
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.7e-81 307.0 298 51.7
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.2e-81 306.6 293 52.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.2e-81 306.6 300 50.7
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.8e-81 306.2 293 52.6
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.8e-81 306.2 293 51.5
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 4.9e-81 305.4 298 50.7
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 8.3e-81 304.7 289 52.2
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-80 304.3 293 51.9
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.1e-80 304.3 309 51.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.4e-80 303.9 293 52.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-80 302.8 292 51.7
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.1e-80 302.8 292 51.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.1e-80 302.8 298 51.3
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 4.1e-80 302.4 300 50.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 5.4e-80 302.0 298 51.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.6e-79 300.4 279 52.3
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.6e-79 300.4 294 50.7
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-79 300.4 292 51.0
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.6e-79 300.4 300 50.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.0e-79 300.1 293 51.5
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.0e-79 300.1 298 51.3
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.7e-79 299.7 295 51.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 3.5e-79 299.3 305 49.5
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.5e-79 299.3 299 49.5
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.0e-78 297.7 301 50.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.0e-78 297.7 302 50.3
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.0e-78 297.7 301 50.5
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.7e-78 297.0 305 50.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.7e-78 297.0 292 51.0
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.3e-77 292.4 316 49.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.2e-76 290.8 301 48.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.6e-76 290.4 293 50.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.6e-76 290.4 295 50.5
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.0e-75 287.7 293 50.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.0e-75 287.7 304 49.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.4e-75 287.3 313 47.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 3.0e-75 286.2 273 51.6
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.0e-75 285.8 296 48.6
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 6.8e-75 285.0 292 46.9
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 8.9e-75 284.6 293 48.1
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.5e-74 283.9 291 48.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.4e-74 282.7 150 88.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.1e-72 277.7 374 40.9
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.6e-70 268.1 294 46.6
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 8.0e-68 261.5 288 49.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-67 260.8 300 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 6.8e-67 258.5 279 48.4
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.2e-66 257.7 272 46.3
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.2e-66 257.7 272 46.3
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.6e-66 256.5 244 51.2
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 5.8e-66 255.4 288 47.2
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.2e-65 253.4 289 48.1
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 6.6e-62 241.9 302 43.4
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.5e-61 238.0 309 46.3
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.6e-60 237.3 219 53.4
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-58 230.7 162 71.0
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.3e-57 227.6 219 51.1
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.1e-56 224.6 220 50.9
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.2e-56 223.0 215 49.3
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.4e-48 196.8 134 69.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-45 187.6 134 67.2
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-45 187.6 134 67.2
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.2e-42 177.9 176 50.0
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-40 168.7 112 70.5
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.6e-39 167.5 293 34.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 7.3e-37 158.7 334 33.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.8e-36 156.8 266 35.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.0e-35 152.9 180 45.6
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.1e-29 134.8 192 41.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.8e-14 84.3 74 52.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.1e-11 75.1 282 25.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.9e-10 69.3 74 45.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.2e-09 67.4 77 42.9


User provided reference genes

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