Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 1.6e-89 332.8 174 100.0
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 2.1e-81 305.8 160 100.0
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 4.5e-60 235.0 137 91.2
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 1.8e-40 169.9 135 68.1
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 4.0e-40 168.7 135 65.9
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 1.2e-39 167.2 135 67.4
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.2e-39 167.2 135 66.7
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.5e-39 166.8 136 67.6
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.8e-37 159.8 135 64.4
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 7.0e-37 157.9 135 63.7
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 7.0e-37 157.9 135 63.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.6e-36 156.8 135 63.0
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 1.6e-36 156.8 135 63.0
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.6e-36 156.8 135 63.0
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 2.0e-36 156.4 135 63.7
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 3.5e-36 155.6 135 61.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 2.5e-34 149.4 135 57.8
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 3.2e-34 149.1 141 53.9
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.2e-34 149.1 135 60.0
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.2e-34 148.7 135 57.0
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 5.5e-34 148.3 135 58.5
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 7.2e-34 147.9 135 61.5
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.2e-33 147.1 135 56.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 2.1e-33 146.4 135 59.3
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.7e-33 146.0 135 56.3
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 3.6e-33 145.6 135 57.8
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 3.6e-33 145.6 135 57.0
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 6.1e-33 144.8 135 55.6
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 6.1e-33 144.8 135 57.8
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 6.1e-33 144.8 135 57.0
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 6.1e-33 144.8 135 57.0
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 8.0e-33 144.4 135 56.3
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 8.0e-33 144.4 135 57.0
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.0e-33 144.4 135 57.0
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.0e-32 144.1 135 58.5
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.4e-32 143.7 134 57.5
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.8e-32 143.3 135 57.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 2.3e-32 142.9 135 55.6
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.0e-32 142.5 135 57.0
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 4.0e-32 142.1 133 56.4
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 4.0e-32 142.1 135 55.6
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 5.2e-32 141.7 135 57.0
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 5.2e-32 141.7 136 56.6
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 6.8e-32 141.4 128 61.7
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 6.8e-32 141.4 135 56.3
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 6.8e-32 141.4 135 54.8
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 6.8e-32 141.4 136 57.4
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.5e-31 140.2 135 54.8
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.5e-31 140.2 135 56.3
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 2.0e-31 139.8 135 54.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 2.0e-31 139.8 135 54.1
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.0e-31 139.8 135 56.3
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 2.6e-31 139.4 135 55.6
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.6e-31 139.4 134 55.2
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 2.6e-31 139.4 134 55.2
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 2.6e-31 139.4 136 56.6
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 2.6e-31 139.4 135 54.1
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 3.4e-31 139.0 135 55.6
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 3.4e-31 139.0 135 55.6
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 7.5e-31 137.9 135 54.1
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 7.5e-31 137.9 136 55.1
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 1.3e-30 137.1 135 53.3
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 2.2e-30 136.3 135 53.3
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 3.7e-30 135.6 135 56.3
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 4.8e-30 135.2 134 53.7
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 6.3e-30 134.8 135 53.3
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 8.3e-30 134.4 119 59.7
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.1e-29 134.0 135 52.6
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.1e-29 134.0 135 52.6
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 1.4e-29 133.7 135 52.6
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.8e-29 133.3 135 51.9
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.8e-29 133.3 135 53.3
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.1e-29 132.5 135 52.6
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 3.1e-29 132.5 135 53.3
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 5.4e-29 131.7 133 52.6
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 7.0e-29 131.3 114 60.5
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 7.0e-29 131.3 135 53.3
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 9.1e-29 131.0 135 51.1
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.2e-28 130.6 135 51.1
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.2e-28 130.6 135 51.1
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 1.6e-28 130.2 132 50.0
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 4.5e-28 128.6 135 50.4
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 5.9e-28 128.3 170 48.8
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 5.9e-28 128.3 137 50.4
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 7.7e-28 127.9 137 49.6
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 1.0e-27 127.5 135 50.4
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 1.7e-27 126.7 135 49.6
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 1.7e-27 126.7 135 50.4
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.2e-26 122.1 135 51.9
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 9.5e-26 120.9 126 50.8
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 9.5e-26 120.9 151 47.7
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.6e-25 120.2 159 44.7
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.6e-25 119.0 137 46.0
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.4e-24 117.1 137 47.4
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.4e-24 117.1 134 46.3
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.8e-24 116.7 176 41.5
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 6.8e-24 114.8 137 46.0
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 2.6e-23 112.8 136 47.8
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 4.4e-23 112.1 203 36.9
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 2.4e-21 106.3 131 45.8
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 7.8e-20 101.3 128 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.0e-19 100.9 126 40.5
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 6.6e-19 98.2 135 45.2
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.1e-18 97.4 137 40.1
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 2.3e-16 89.7 114 44.7
BcaC05g26361 Brassica carinata HOM05D031756 ORTHO05D019968 5.2e-16 88.6 67 73.1
C05p24000 Brassica napus HOM05D031756 ORTHO05D019968 8.9e-16 87.8 67 71.6
C05p24030 Brassica napus HOM05D003115 ORTHO05D019968 2.0e-15 86.7 67 73.1
BolC5t31130H Brassica oleracea HOM05D031756 ORTHO05D019968 2.6e-15 86.3 67 71.6
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 3.4e-15 85.9 84 51.2
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 3.4e-15 85.9 84 51.2
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 2.9e-14 82.8 114 42.1
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 2.9e-14 82.8 70 57.1
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 3.2e-13 79.3 75 56.0
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.5e-12 75.9 54 70.4
BcaB06g28128 Brassica carinata HOM05D022923 ORTHO05D024227 1.7e-11 73.6 50 78.0
SHI16728 Sapria himalayana HOM05D003115 ORTHO05D003595 1.7e-11 73.6 76 51.3
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 1.5e-10 70.5 115 40.0
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.5e-10 70.5 69 50.7
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 5.6e-10 68.6 87 46.0
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 5.6e-10 68.6 87 46.0
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.1e-08 64.3 67 50.7
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 4.0e-08 62.4 52 61.5
Cc00_g09580 Coffea canephora HOM05D003115 ORTHO05D003595 1.2e-07 60.8 58 51.7
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.6e-07 59.7 54 55.6
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 2.2e-06 56.6 136 30.1


User provided reference genes

Program Settings