Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 1.0e-46 189.9 106 100.0
C07p36590 Brassica napus HOM05D035163 ORTHO05D012808 1.4e-24 116.3 81 86.4
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 9.2e-24 113.6 76 81.6
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 1.6e-23 112.8 89 70.8
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.2e-20 103.2 61 90.2
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-20 103.2 61 90.2
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.1e-20 102.4 61 88.5
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-19 100.1 61 88.5
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.5e-18 96.3 61 83.6
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.8e-18 93.6 61 77.0
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.2e-17 92.4 55 85.5
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.9e-17 92.0 59 79.7
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.7e-17 91.7 59 81.4
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 3.7e-17 91.7 59 81.4
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 3.7e-17 91.7 59 81.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 3.7e-17 91.7 57 80.7
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 4.9e-17 91.3 59 81.4
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 4.9e-17 91.3 60 78.3
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.1e-16 90.1 62 72.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.1e-16 90.1 59 79.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.9e-16 89.4 59 79.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.0e-14 82.0 54 74.1
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.1e-11 73.6 55 63.6
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 5.2e-11 71.2 53 64.2
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.2e-11 71.2 53 64.2
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.8e-11 70.9 53 62.3
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 8.9e-11 70.5 53 64.2
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 8.9e-11 70.5 53 64.2
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-10 69.3 53 62.3
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 2.0e-10 69.3 53 62.3
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 4.4e-10 68.2 53 64.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 9.9e-10 67.0 53 62.3
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.3e-09 66.6 57 54.4
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.3e-09 66.6 57 54.4
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 1.3e-09 66.6 57 54.4
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.9e-09 65.5 53 58.5
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.9e-09 65.5 53 58.5
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 6.4e-09 64.3 54 61.1
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 8.4e-09 63.9 64 54.7
C09p04090 Brassica napus HOM05D005423 ORTHO05D006223 8.4e-09 63.9 52 71.2
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 8.4e-09 63.9 61 57.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 1.9e-08 62.8 52 59.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.4e-08 62.4 51 58.8
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 3.2e-08 62.0 63 55.6
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 4.1e-08 61.6 61 55.7
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.1e-08 61.6 51 58.8
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 5.4e-08 61.2 48 66.7
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 5.4e-08 61.2 63 52.4
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 7.1e-08 60.8 51 58.8
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 7.1e-08 60.8 52 55.8
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 9.2e-08 60.5 72 48.6
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.2e-07 60.1 57 47.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.2e-07 60.1 61 52.5
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.6e-07 59.7 49 59.2
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.6e-07 59.7 52 59.6
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.1e-07 59.3 49 59.2
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 2.1e-07 59.3 49 59.2
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.1e-07 59.3 49 59.2
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 3.5e-07 58.5 49 59.2
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 4.6e-07 58.2 77 48.1
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 4.6e-07 58.2 50 56.0
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.6e-07 58.2 52 55.8
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.0e-07 57.8 62 46.8
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.0e-07 57.8 49 57.1
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 6.0e-07 57.8 52 59.6
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.8e-07 57.4 63 50.8
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 7.8e-07 57.4 49 57.1
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.0e-06 57.0 50 58.0
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-06 56.6 62 46.8
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.3e-06 56.6 73 45.2
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.7e-06 56.2 62 45.2
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 2.3e-06 55.8 52 55.8
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 2.3e-06 55.8 52 55.8
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.3e-06 55.8 52 55.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.0e-06 55.5 54 53.7
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 3.9e-06 55.1 62 50.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 5.1e-06 54.7 52 51.9
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 5.1e-06 54.7 49 57.1
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 6.6e-06 54.3 54 48.1
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 6.6e-06 54.3 54 48.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 6.6e-06 54.3 50 50.0
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 8.6e-06 53.9 54 48.1
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 8.6e-06 53.9 50 54.0


User provided reference genes

Program Settings