Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 9.9e-61 236.9 145 100.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 9.9e-61 236.9 145 100.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-55 219.5 145 94.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 6.2e-55 217.6 144 94.4
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 7.8e-50 200.7 145 89.7
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-48 194.9 149 69.8
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-37 159.8 167 64.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 6.4e-36 154.5 166 63.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-35 152.1 155 54.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.6e-34 149.8 168 69.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 4.6e-34 148.3 168 66.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-33 146.0 167 62.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 6.7e-33 144.4 176 59.1
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 7.4e-32 141.0 166 61.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 9.6e-32 140.6 166 60.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-31 139.0 154 51.3
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.8e-31 139.0 154 51.3
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.0e-29 132.9 166 62.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.0e-29 132.9 167 62.9
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.9e-29 130.6 170 62.4
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.2e-28 129.4 166 62.0
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.9e-28 129.0 175 58.3
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.9e-28 129.0 162 54.3
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-28 128.6 155 63.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 8.4e-28 127.5 172 60.5
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-27 126.3 184 58.7
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-27 125.9 182 57.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.4e-27 125.9 164 51.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-27 125.2 134 70.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.2e-27 125.2 162 59.9
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-26 123.2 189 55.6
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-26 123.2 189 55.6
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-26 122.5 154 48.7
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-26 122.5 154 48.7
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.7e-26 122.5 154 48.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.0e-26 121.3 178 55.1
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-25 119.8 165 56.4
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.9e-25 118.6 177 56.5
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-25 118.6 165 57.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-25 117.9 147 62.6
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 8.7e-25 117.5 180 57.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-24 115.9 171 52.0
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-24 115.9 161 59.6
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-24 115.5 161 59.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 9.6e-24 114.0 195 53.3
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-23 113.6 133 55.6
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.3e-23 113.6 164 55.5
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.8e-23 112.5 145 50.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 6.2e-23 111.3 136 50.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.8e-22 109.8 132 55.3
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.4e-22 109.4 178 52.8
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.4e-22 109.4 153 53.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 3.1e-22 109.0 202 51.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.0e-22 108.6 167 43.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 5.3e-22 108.2 139 41.7
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 6.9e-22 107.8 146 61.6
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 6.9e-22 107.8 163 55.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.2e-21 107.1 138 41.3
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.2e-21 107.1 132 44.7
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.0e-21 106.3 136 52.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 2.6e-21 105.9 133 43.6
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.6e-21 105.9 130 51.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.8e-21 104.8 154 56.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.6e-21 104.4 127 58.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.0e-20 104.0 163 41.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.3e-20 103.6 149 51.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.7e-20 103.2 143 46.2
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.2e-20 102.8 163 42.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.2e-20 102.8 149 57.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.9e-20 102.4 145 60.7
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.9e-20 102.4 149 53.0
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.9e-20 102.4 149 53.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.9e-20 101.7 131 52.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 6.5e-20 101.3 133 47.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 8.4e-20 100.9 133 48.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 8.4e-20 100.9 130 50.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.4e-19 100.1 137 58.4
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.9e-19 99.8 128 46.9
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.5e-19 99.4 146 56.8
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.5e-19 99.4 153 54.2
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.5e-19 99.4 185 45.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 3.2e-19 99.0 156 53.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.5e-19 98.2 148 47.3
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.5e-19 98.2 179 45.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 7.1e-19 97.8 155 47.7
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 7.1e-19 97.8 155 47.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 7.1e-19 97.8 188 43.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 9.3e-19 97.4 158 45.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 9.3e-19 97.4 136 58.1
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.2e-18 97.1 147 53.1
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.2e-18 97.1 132 50.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.6e-18 96.7 136 39.7
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.1e-18 96.3 132 58.3
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.1e-18 96.3 142 58.5
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.6e-18 95.1 134 41.0
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 7.9e-18 94.4 139 56.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.0e-17 94.0 139 49.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.8e-17 93.2 178 35.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.3e-17 92.8 189 48.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.0e-17 92.4 146 50.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.9e-17 92.0 143 54.5
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.1e-17 91.7 158 38.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.1e-17 91.7 134 50.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 5.1e-17 91.7 130 60.0
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.7e-17 91.3 145 51.7
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.7e-17 91.3 149 47.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.7e-17 90.9 151 46.4
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 8.7e-17 90.9 155 45.8
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.1e-16 90.5 142 35.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-16 90.5 152 45.4
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.1e-16 90.5 151 47.0
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.5e-16 90.1 137 56.9
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.5e-16 89.4 176 34.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.5e-16 89.4 144 43.1
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 3.3e-16 89.0 146 39.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 4.3e-16 88.6 151 37.7
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 7.4e-16 87.8 182 48.4
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 9.7e-16 87.4 151 43.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 9.7e-16 87.4 135 43.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 9.7e-16 87.4 141 56.0
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.2e-15 86.3 135 48.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.2e-15 86.3 124 53.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.8e-15 85.9 150 48.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.7e-15 85.5 137 46.7
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.3e-15 84.7 130 50.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.3e-15 84.7 180 47.2
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 8.2e-15 84.3 152 43.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 8.2e-15 84.3 143 41.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 8.2e-15 84.3 140 35.7
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-14 84.0 141 55.3
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.1e-14 84.0 161 44.1
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.4e-14 83.6 126 44.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-14 83.6 148 37.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.8e-14 83.2 159 42.1
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.4e-14 82.8 143 53.8
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.1e-14 82.4 179 38.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.1e-14 82.4 139 34.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.3e-14 81.6 156 39.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.9e-14 81.3 117 40.2
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 6.9e-14 81.3 147 37.4
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 9.0e-14 80.9 164 43.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.2e-13 80.5 149 50.3
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.2e-13 80.5 141 54.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.2e-13 80.5 157 51.6
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.5e-13 80.1 141 34.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.5e-13 80.1 152 31.6
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.0e-13 79.7 165 33.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.6e-13 79.3 132 57.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.4e-13 79.0 184 44.0
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 7.7e-13 77.8 153 30.1
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.9e-12 75.9 38 84.2
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.9e-12 75.9 161 36.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.9e-12 75.9 159 49.1
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 2.9e-12 75.9 159 49.1
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.5e-12 74.7 174 37.9
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.1e-11 73.9 124 41.9
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.4e-11 70.9 157 49.0
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 9.4e-11 70.9 125 33.6
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.9e-10 67.8 131 45.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.0e-09 67.4 126 32.5
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.0e-09 67.4 174 30.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.0e-09 67.4 131 45.8
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-09 65.9 131 45.8
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.8e-09 64.3 135 31.9
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.1e-08 63.9 103 46.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.0e-08 63.2 123 32.5
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-07 60.5 158 27.2
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.7e-07 60.1 181 25.4
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.1e-06 55.5 163 24.5


User provided reference genes

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