Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26821 Brassica carinata HOM05D008236 ORTHO05D010394 1.5e-42 175.6 79 100.0
A09p37890 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-42 175.6 79 100.0
C05p26930 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-42 175.6 79 100.0
BraA09t39301Z Brassica rapa HOM05D008236 ORTHO05D010394 1.5e-42 175.6 79 100.0
Thhalv10027564m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 4.0e-24 114.4 76 64.5
AL4G18670 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 6.6e-19 97.1 76 55.3
A01p08760 Brassica napus HOM05D008236 ORTHO05D010394 2.5e-18 95.1 77 59.7
BraA01t00826Z Brassica rapa HOM05D008236 ORTHO05D010394 2.5e-18 95.1 77 59.7
CARHR237050 Cardamine hirsuta HOM05D008236 ORTHO05D010394 4.3e-18 94.4 77 57.1
AT4G29273 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.1e-17 92.0 76 52.6
C01p10280 Brassica napus HOM05D008236 ORTHO05D010394 1.1e-16 89.7 77 57.1
Thhalv10026870m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 1.1e-16 89.7 76 55.3
AT4G29290 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.4e-16 88.6 76 53.9
Thhalv10027145m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 4.0e-16 87.8 76 53.9
AT4G29300 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 5.3e-16 87.4 76 51.3
AL7G23150 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 6.9e-16 87.0 76 52.6
AT4G29305 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 6.9e-16 87.0 76 52.6
Carub.0007s1126 Capsella rubella HOM05D008236 ORTHO05D010394 6.9e-16 87.0 76 53.9
BolC1t00984H Brassica oleracea HOM05D008236 ORTHO05D010394 1.2e-15 86.3 77 55.8
Carub.0007s1129 Capsella rubella HOM05D008236 ORTHO05D010394 2.0e-15 85.5 77 54.5
AT4G29280 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 5.8e-15 84.0 76 50.0
C01p10300 Brassica napus HOM05D008236 ORTHO05D010394 1.3e-14 82.8 77 54.5
Carub.0007s1127 Capsella rubella HOM05D008236 ORTHO05D010394 4.9e-14 80.9 76 48.7
CARHR237090 Cardamine hirsuta HOM05D008236 ORTHO05D010394 6.4e-14 80.5 76 51.3
Aa31LG2G21150 Aethionema arabicum HOM05D008236 ORTHO05D010394 1.9e-13 79.0 81 53.1
AL7G23140 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 2.4e-13 78.6 76 50.0
AL7G23170 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 3.2e-13 78.2 73 49.3
A01p08740 Brassica napus HOM05D008236 ORTHO05D010394 7.1e-13 77.0 77 50.6
BraA01t00824Z Brassica rapa HOM05D008236 ORTHO05D010394 7.1e-13 77.0 77 50.6
AT4G29283 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.7e-12 75.1 76 46.1
BcaB03g12409 Brassica carinata HOM05D008236 ORTHO05D010394 2.7e-12 75.1 76 47.4
BcaC01g00492 Brassica carinata HOM05D008236 ORTHO05D010394 2.7e-12 75.1 76 46.1
C03p80630 Brassica napus HOM05D008236 ORTHO05D010394 2.7e-12 75.1 76 46.1
BolC3t20306H Brassica oleracea HOM05D008236 ORTHO05D010394 2.7e-12 75.1 76 46.1
AL6G42900 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 6.0e-12 73.9 76 48.7
AL4G11440 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.0e-11 73.2 77 44.2
AL6G42890 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.0e-11 73.2 75 49.3
AT2G22121 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.3e-11 72.0 77 44.2
BraA08t33848Z Brassica rapa HOM05D008236 ORTHO05D010394 3.0e-11 71.6 76 43.4
BolC3t20299H Brassica oleracea HOM05D008236 ORTHO05D010394 3.9e-11 71.2 79 41.8
A08p21920 Brassica napus HOM05D008236 ORTHO05D010394 6.7e-11 70.5 79 41.8
C03p80550 Brassica napus HOM05D008236 ORTHO05D010394 6.7e-11 70.5 79 41.8
BraA08t34144Z Brassica rapa HOM05D008236 ORTHO05D010394 6.7e-11 70.5 79 41.8
Thhalv10023924m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 1.1e-10 69.7 76 46.1
A08p21900 Brassica napus HOM05D008236 ORTHO05D010394 4.3e-10 67.8 79 40.5
BraA08t34143Z Brassica rapa HOM05D008236 ORTHO05D010394 4.3e-10 67.8 79 40.5
CARHR237060 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.6e-09 65.9 76 44.7
AT4G09153 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 3.7e-09 64.7 76 43.4
Carub.0007s1128 Capsella rubella HOM05D009471 ORTHO05D011939 1.1e-08 63.2 82 41.5
THA.LOC109116902 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 2.4e-08 62.0 79 35.4
THA.LOC109116887 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 3.1e-08 61.6 79 35.4
BcaB03g12677 Brassica carinata HOM05D008236 ORTHO05D010394 4.0e-08 61.2 77 44.2
A08p18850 Brassica napus HOM05D008236 ORTHO05D010394 1.2e-07 59.7 77 42.9
CARHR237080 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.2e-07 59.7 76 42.1
BcaC01g01110 Brassica carinata HOM05D008236 ORTHO05D010394 2.0e-07 58.9 77 41.6
BolC3t21132H Brassica oleracea HOM05D008236 ORTHO05D010394 2.0e-07 58.9 77 41.6
BraA08t33846Z Brassica rapa HOM05D008236 ORTHO05D010394 2.0e-07 58.9 77 41.6
C03p88220 Brassica napus HOM05D008236 ORTHO05D010394 2.6e-07 58.5 77 41.6
AT4G29285 Arabidopsis thaliana HOM05D009471 ORTHO05D011939 4.5e-07 57.8 82 41.5
CARHR237070 Cardamine hirsuta HOM05D008236 ORTHO05D010394 2.2e-06 55.5 77 41.6
A09p04690 Brassica napus HOM05D010086 ORTHO05D010053 3.8e-06 54.7 78 38.5
C07p39500 Brassica napus HOM05D010086 ORTHO05D010053 3.8e-06 54.7 77 33.8
BolC7t44469H Brassica oleracea HOM05D010086 ORTHO05D010053 3.8e-06 54.7 77 33.8
BraA09t36106Z Brassica rapa HOM05D010086 ORTHO05D010053 3.8e-06 54.7 78 38.5
CARHR182780 Cardamine hirsuta HOM05D010086 ORTHO05D010053 4.9e-06 54.3 81 35.8
A08p18860 Brassica napus HOM05D008236 ORTHO05D010394 6.4e-06 53.9 77 41.6
BraA08t33847Z Brassica rapa HOM05D008236 ORTHO05D010394 6.4e-06 53.9 77 41.6
Thhalv10005578m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 6.4e-06 53.9 77 33.8
C09p05000 Brassica napus HOM05D010086 ORTHO05D010053 8.4e-06 53.5 77 37.7
BolC9t53429H Brassica oleracea HOM05D010086 ORTHO05D010053 8.4e-06 53.5 77 37.7


User provided reference genes

Program Settings