Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p37870 Brassica napus HOM05D002829 ORTHO05D003124 1.2e-150 536.6 281 100.0
BraA09t39299Z Brassica rapa HOM05D002829 ORTHO05D003124 1.2e-150 536.6 281 100.0
BolC5t31417H Brassica oleracea HOM05D002829 ORTHO05D003124 1.0e-138 496.9 281 95.4
BcaC05g26825 Brassica carinata HOM05D002829 ORTHO05D003124 5.1e-138 494.6 281 95.0
C05p27000 Brassica napus HOM05D002829 ORTHO05D003124 3.4e-134 481.9 281 92.9
BcaB07g32428 Brassica carinata HOM05D002829 ORTHO05D003124 7.6e-126 454.1 282 89.4
Sp1g24380 Schrenkiella parvula HOM05D002829 ORTHO05D003124 3.5e-115 418.7 283 82.0
Thhalv10008463m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 1.5e-105 386.7 284 77.1
BcaB03g12129 Brassica carinata HOM05D002829 ORTHO05D003124 1.2e-99 367.1 285 76.1
CARHR027680 Cardamine hirsuta HOM05D002829 ORTHO05D003124 5.1e-98 361.7 282 72.3
AL1G41730 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 4.8e-96 355.1 281 71.9
A08p25820 Brassica napus HOM05D002829 ORTHO05D003124 2.9e-93 345.9 284 72.9
BraA08t34537Z Brassica rapa HOM05D002829 ORTHO05D003124 2.9e-93 345.9 284 72.9
Carub.0001s2663 Capsella rubella HOM05D002829 ORTHO05D003124 1.8e-90 336.7 280 68.6
BolC3t19731H Brassica oleracea HOM05D002829 ORTHO05D003124 1.7e-88 330.1 277 71.8
AT1G28190 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.3e-85 320.5 239 72.8
BcaC01g00013 Brassica carinata HOM05D002829 ORTHO05D003124 3.8e-85 318.9 257 71.6
C03p74800 Brassica napus HOM05D002829 ORTHO05D003124 3.8e-85 318.9 257 71.6
Aa31sc50G50 Aethionema arabicum HOM05D002829 ORTHO05D003124 1.6e-75 287.0 247 66.8
THA.LOC104820537 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 3.4e-57 226.1 287 49.8
A01p30880 Brassica napus HOM05D002829 ORTHO05D003124 3.6e-43 179.5 135 77.0
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.9e-39 167.2 237 46.0
Atru.chr12.1478 Acer truncatum HOM05D002829 ORTHO05D003124 3.2e-39 166.4 214 46.7
MD13G1134300 Malus domestica HOM05D002829 ORTHO05D003124 3.2e-39 166.4 216 46.8
MBI11_g17276_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 9.2e-39 164.9 221 46.6
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 9.2e-39 164.9 237 44.7
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 1.2e-38 164.5 239 44.8
Cpa.g.sc38.55 Carica papaya HOM05D002829 ORTHO05D003124 6.0e-38 162.2 249 43.4
FAN07G1465 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.0e-37 161.4 197 48.7
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.7e-37 160.6 232 44.8
Thecc.01G239500 Theobroma cacao HOM05D002829 ORTHO05D003124 6.6e-37 158.7 278 42.4
ClCG10G013080 Citrullus lanatus HOM05D002829 ORTHO05D003124 1.1e-36 157.9 212 42.9
Duzib264G0406 Durio zibethinus HOM05D002829 ORTHO05D003124 1.9e-36 157.1 199 47.7
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 1.9e-36 157.1 260 40.0
Manes.08G099100 Manihot esculenta HOM05D002829 ORTHO05D003124 2.5e-36 156.8 239 41.4
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 2.5e-36 156.8 237 43.9
FAN17G0858 Fragaria x ananassa HOM05D002829 ORTHO05D003124 3.3e-36 156.4 197 48.7
FvH4_4g22140 Fragaria vesca HOM05D002829 ORTHO05D003124 5.6e-36 155.6 227 45.4
FAN12G1147 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.6e-36 155.6 227 45.4
TWI18G0126 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 7.3e-36 155.2 268 40.7
MD16G1144900 Malus domestica HOM05D002829 ORTHO05D003124 1.2e-35 154.5 214 46.7
Prupe.1G211200 Prunus persica HOM05D002829 ORTHO05D003124 1.6e-35 154.1 215 44.7
RcHm_v2.0_Chr4g0428381 Rosa chinensis HOM05D002829 ORTHO05D003124 2.1e-35 153.7 195 47.2
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 2.8e-35 153.3 266 38.7
Ciclev10029923m.g Citrus clementina HOM05D002829 ORTHO05D003124 2.8e-35 153.3 242 42.1
MBI07_g42014_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010528 2.8e-35 153.3 195 45.6
Eucgr.J01660 Eucalyptus grandis HOM05D002829 ORTHO05D003124 3.6e-35 152.9 211 45.0
PGR102G0495 Punica granatum HOM05D002829 ORTHO05D003124 3.6e-35 152.9 244 42.6
TWI75G0707 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 4.7e-35 152.5 236 41.1
Duzib147G1098 Durio zibethinus HOM05D002829 ORTHO05D003124 6.2e-35 152.1 222 43.2
CiPaw.06G111500 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.8e-34 150.6 238 41.6
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 2.4e-34 150.2 258 39.1
TWI36G1156 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 2.4e-34 150.2 230 43.5
MELO3C026752.2 Cucumis melo HOM05D002829 ORTHO05D003124 5.2e-34 149.1 203 44.3
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 5.2e-34 149.1 260 40.4
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 6.8e-34 148.7 235 40.9
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 4.9e-32 142.5 241 41.5
ATR0582G260 Amborella trichopoda HOM05D002829 ORTHO05D003124 6.4e-32 142.1 203 42.9
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.4e-31 140.2 241 41.1
PSO017G0067 Papaver somniferum HOM05D002829 ORTHO05D003124 4.1e-31 139.4 211 41.7
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 5.4e-31 139.0 191 43.5
CSS0000234 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 7.1e-31 138.7 214 41.6
CSS0019210 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 7.1e-31 138.7 214 41.6
Sed0013476 Sechium edule HOM05D002829 ORTHO05D003124 1.2e-30 137.9 192 44.3
COL.COLO4_16099 Corchorus olitorius HOM05D002829 ORTHO05D003124 1.6e-30 137.5 229 42.4
CDE09G0437 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 3.5e-30 136.3 194 44.8
PSO478G2462 Papaver somniferum HOM05D002829 ORTHO05D003124 6.0e-30 135.6 230 40.4
Sed0018664 Sechium edule HOM05D002829 ORTHO05D003124 5.1e-29 132.5 228 38.2
MSTRG.439 Avicennia marina HOM05D002829 ORTHO05D003124 1.1e-28 131.3 209 41.6
MSTRG.8064 Avicennia marina HOM05D002829 ORTHO05D003124 1.6e-27 127.5 215 40.0
CDE02G1175 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.6e-27 127.5 206 39.3
Migut.K01135 Erythranthe guttata HOM05D002829 ORTHO05D003124 8.1e-27 125.2 201 40.3
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 1.1e-23 114.8 170 44.1
HanXRQChr17g0568751 Helianthus annuus HOM05D002829 ORTHO05D003124 7.8e-22 108.6 247 36.8
Lsat_1_v5_gn_4_1720 Lactuca sativa HOM05D002829 ORTHO05D003124 1.3e-21 107.8 227 37.0
HPP92_000320 Vanilla planifolia HOM05D002829 ORTHO05D003124 2.4e-18 97.1 177 39.0
unitig_699.g19969 Utricularia gibba HOM05D002829 ORTHO05D003124 2.0e-17 94.0 200 33.0
HPP92_020117 Vanilla planifolia HOM05D002829 ORTHO05D003124 9.9e-17 91.7 205 33.7
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 2.2e-16 90.5 186 34.4
SEGI_29550 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 2.9e-16 90.1 200 34.0
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 4.9e-16 89.4 182 36.3
SEGI_01737 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 4.9e-16 89.4 186 33.9
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 6.4e-16 89.0 186 36.6
Nn7g36674 Nelumbo nucifera HOM05D002829 ORTHO05D003124 3.2e-15 86.7 204 34.8
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 3.2e-15 86.7 200 34.5
FAN21G1998 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.4e-15 85.9 188 35.1
FAN16G1561 Fragaria x ananassa HOM05D002829 ORTHO05D003124 7.1e-15 85.5 188 35.1
unitig_747.g21104 Utricularia gibba HOM05D002829 ORTHO05D003124 9.3e-15 85.1 195 33.3
Manes.02G139900 Manihot esculenta HOM05D002829 ORTHO05D003124 1.6e-14 84.3 182 35.7
Lsat_1_v5_gn_2_33560 Lactuca sativa HOM05D002829 ORTHO05D003124 2.1e-14 84.0 173 37.6
FAN11G2404 Fragaria x ananassa HOM05D002829 ORTHO05D003124 4.6e-14 82.8 179 36.3
Nn2g14835 Nelumbo nucifera HOM05D002829 ORTHO05D003124 4.6e-14 82.8 198 32.8
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 6.0e-14 82.4 156 35.9
FvH4_3g27940 Fragaria vesca HOM05D002829 ORTHO05D003124 6.0e-14 82.4 188 35.1
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 6.0e-14 82.4 180 34.4
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 7.9e-14 82.0 186 32.8
CSS0010856 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 1.0e-13 81.6 181 35.9
Gohir.D05G074300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.3e-13 81.3 203 32.5
Glyma.14G034700 Glycine max HOM05D002829 ORTHO05D003124 1.8e-13 80.9 186 33.9
HanXRQChr14g0432431 Helianthus annuus HOM05D002829 ORTHO05D003124 1.8e-13 80.9 183 36.1
TPR.G19349 Trifolium pratense HOM05D002829 ORTHO05D003124 1.8e-13 80.9 208 31.7
Gohir.A07G120300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.3e-13 80.5 204 33.8
Gohir.D07G124500 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.3e-13 80.5 204 33.8
Gorai.001G134300 Gossypium raimondii HOM05D002829 ORTHO05D003124 2.3e-13 80.5 204 33.8
Oeu001330.1 Olea europaea HOM05D002829 ORTHO05D003124 2.3e-13 80.5 186 36.0
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 2.3e-13 80.5 181 33.1
Zm00001eb113580 Zea mays HOM05D002829 ORTHO05D003124 2.3e-13 80.5 184 34.2
Eucgr.J00699 Eucalyptus grandis HOM05D002829 ORTHO05D003124 3.0e-13 80.1 198 30.8
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 3.0e-13 80.1 180 34.4
Cpa.g.sc482.1 Carica papaya HOM05D002829 ORTHO05D003124 3.9e-13 79.7 186 34.9
Gohir.A05G071400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 3.9e-13 79.7 203 32.5
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 3.9e-13 79.7 184 33.2
PGR119G1580 Punica granatum HOM05D002829 ORTHO05D003124 3.9e-13 79.7 188 33.0
MD03G1167500 Malus domestica HOM05D002829 ORTHO05D003124 5.1e-13 79.3 189 34.4
Nn3g16206 Nelumbo nucifera HOM05D002829 ORTHO05D003124 5.1e-13 79.3 91 46.2
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 5.1e-13 79.3 193 34.2
Nn4g22068 Nelumbo nucifera HOM05D002829 ORTHO05D003124 6.7e-13 79.0 65 55.4
Glyma.02G280100 Glycine max HOM05D002829 ORTHO05D003124 8.7e-13 78.6 187 32.6
Gorai.009G075400 Gossypium raimondii HOM05D002829 ORTHO05D003124 8.7e-13 78.6 203 31.5
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 8.7e-13 78.6 220 30.5
PGSC0003DMG400016928 Solanum tuberosum HOM05D002829 ORTHO05D003124 8.7e-13 78.6 184 31.0
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 1.5e-12 77.8 158 36.7
arahy.Tifrunner.gnm1.ann1.9SET9D Arachis hypogaea HOM05D002829 ORTHO05D003124 1.9e-12 77.4 182 33.5
MD11G1186400 Malus domestica HOM05D002829 ORTHO05D003124 2.5e-12 77.0 190 33.7
AT5G12340 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 4.3e-12 76.3 166 34.3
Medtr5g089820 Medicago truncatula HOM05D002829 ORTHO05D003124 4.3e-12 76.3 197 33.0
ATR0745G071 Amborella trichopoda HOM05D002829 ORTHO05D003124 7.4e-12 75.5 180 32.8
Thhalv10015959m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 9.6e-12 75.1 167 32.9
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 9.6e-12 75.1 209 33.0
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 9.6e-12 75.1 168 34.5
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 1.3e-11 74.7 170 34.7
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 1.3e-11 74.7 181 31.5
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 1.6e-11 74.3 165 35.8
arahy.Tifrunner.gnm1.ann1.Z08FR7 Arachis hypogaea HOM05D002829 ORTHO05D003124 2.1e-11 73.9 167 35.3
AL6G23140 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 2.8e-11 73.6 164 34.1
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 2.8e-11 73.6 211 29.4
QL01p017384 Quercus lobata HOM05D002829 ORTHO05D003124 2.8e-11 73.6 180 33.9
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 4.8e-11 72.8 200 32.0
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 4.8e-11 72.8 172 33.1
Eucgr.B03728 Eucalyptus grandis HOM05D002829 ORTHO05D003124 6.2e-11 72.4 214 31.8
BcaNung03622 Brassica carinata HOM05D002829 ORTHO05D003124 1.1e-10 71.6 166 32.5
Potri.009G071100 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.4e-10 71.2 183 32.2
BraA02t05127Z Brassica rapa HOM05D002829 ORTHO05D003124 3.1e-10 70.1 165 33.3
Sed0001383 Sechium edule HOM05D002829 ORTHO05D003124 3.1e-10 70.1 166 36.1
BcaNung03623 Brassica carinata HOM05D002829 ORTHO05D003124 4.0e-10 69.7 165 32.7
CsaV3_1G043320 Cucumis sativus L. HOM05D002829 ORTHO05D003124 4.0e-10 69.7 161 36.0
Sabra09G0053800 Salix brachista HOM05D002829 ORTHO05D003124 4.0e-10 69.7 183 31.7
Migut.D00655 Erythranthe guttata HOM05D002829 ORTHO05D003124 5.3e-10 69.3 183 32.2
SalBow6G5405 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.2e-09 68.2 173 34.7
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 1.2e-09 68.2 96 39.6
A10p25480 Brassica napus HOM05D002829 ORTHO05D003124 1.5e-09 67.8 163 33.1
C09p64560 Brassica napus HOM05D002829 ORTHO05D003124 1.5e-09 67.8 163 33.1
BraA10t44612Z Brassica rapa HOM05D002829 ORTHO05D003124 1.5e-09 67.8 163 33.1
Sp6g31300 Schrenkiella parvula HOM05D002829 ORTHO05D003124 1.5e-09 67.8 188 31.4
A02p01480 Brassica napus HOM05D002829 ORTHO05D003124 2.0e-09 67.4 165 32.7
Duzib170G0965 Durio zibethinus HOM05D002829 ORTHO05D003124 2.0e-09 67.4 181 30.9
Manes.01G179200 Manihot esculenta HOM05D002829 ORTHO05D003124 3.4e-09 66.6 183 31.1
Zm00001eb394490 Zea mays HOM05D002829 ORTHO05D003124 4.5e-09 66.2 193 31.6
BolC9t59289H Brassica oleracea HOM05D002829 ORTHO05D003124 7.6e-09 65.5 176 31.2
ECA238G1676 Erigeron canadensis HOM05D002829 ORTHO05D003124 7.6e-09 65.5 191 27.7
Nn7g36102 Nelumbo nucifera HOM05D002829 ORTHO05D003124 9.9e-09 65.1 80 45.0
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 1.3e-08 64.7 187 32.1
ClCG03G012660 Citrullus lanatus HOM05D002829 ORTHO05D003124 3.8e-08 63.2 198 30.8
Sed0010124 Sechium edule HOM05D002829 ORTHO05D003124 3.8e-08 63.2 183 33.3
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 4.9e-08 62.8 181 29.3
MELO3C015127.2 Cucumis melo HOM05D002829 ORTHO05D003124 8.4e-08 62.0 182 32.4
Nn5g30140 Nelumbo nucifera HOM05D002829 ORTHO05D003124 8.4e-08 62.0 58 46.6
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.1e-07 61.6 157 31.8
Aa31LG3G14890 Aethionema arabicum HOM05D002829 ORTHO05D003124 1.4e-07 61.2 171 32.7
PSO339G3894 Papaver somniferum HOM05D002829 ORTHO05D003124 1.4e-07 61.2 181 28.7
Sed0021871 Sechium edule HOM05D002829 ORTHO05D003124 1.9e-07 60.8 166 32.5
PGSC0003DMG400023470 Solanum tuberosum HOM05D002829 ORTHO05D003124 4.2e-07 59.7 146 31.5
Os05g0385400 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 7.1e-07 58.9 192 31.2
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 7.1e-07 58.9 97 36.1
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 9.3e-07 58.5 78 39.7
Potri.004G149600 Populus trichocarpa HOM05D001022 ORTHO05D000825 1.2e-06 58.2 82 36.6
Zm00001eb140690 Zea mays HOM05D002829 ORTHO05D003124 1.2e-06 58.2 166 31.3
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.6e-06 57.8 184 28.8
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 2.1e-06 57.4 71 42.3
Nn6g35490 Nelumbo nucifera HOM05D002829 ORTHO05D003124 4.6e-06 56.2 55 40.0
ECA238G0262 Erigeron canadensis HOM05D001022 ORTHO05D000825 6.0e-06 55.8 79 39.2
PGR042G0153 Punica granatum HOM05D001022 ORTHO05D000825 7.9e-06 55.5 113 33.6


User provided reference genes

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