Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 4.5e-124 448.0 234 100.0
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 5.2e-120 434.5 235 97.9
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 5.4e-101 371.3 261 78.9
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 2.7e-100 369.0 278 74.8
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 6.2e-97 357.8 234 84.2
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.8e-80 303.1 278 63.3
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 6.4e-78 294.7 280 62.5
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.3e-75 286.2 279 61.3
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 5.1e-75 285.0 278 60.8
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 4.8e-73 278.5 260 65.0
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 2.2e-70 269.6 280 58.6
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 6.5e-46 188.3 270 43.7
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 2.3e-43 179.9 230 44.8
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.9e-43 179.1 233 44.6
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 5.1e-43 178.7 230 44.3
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 8.8e-43 177.9 233 44.2
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.1e-40 171.0 234 44.4
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 3.1e-40 169.5 234 40.6
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 4.1e-40 169.1 234 42.7
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 1.7e-38 163.7 211 44.1
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 2.9e-38 162.9 231 41.6
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.9e-37 160.2 217 41.0
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 4.2e-37 159.1 222 41.4
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.2e-36 157.5 230 40.4
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 1.6e-36 157.1 230 40.0
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 2.7e-36 156.4 234 38.9
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 6.1e-36 155.2 215 40.9
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.0e-35 152.9 219 39.7
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 2.0e-34 150.2 202 42.1
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 2.6e-34 149.8 281 36.7
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 4.4e-34 149.1 222 41.4
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 5.7e-34 148.7 234 40.2
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 7.4e-34 148.3 202 43.1
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 9.7e-34 147.9 242 39.3
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 2.2e-33 146.7 175 46.3
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 2.8e-33 146.4 242 38.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.8e-32 143.7 216 38.4
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.4e-32 143.3 218 38.5
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 3.1e-32 142.9 176 46.6
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.1e-32 142.9 234 36.3
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 7.0e-32 141.7 226 36.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 7.0e-32 141.7 216 37.0
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 7.0e-32 141.7 227 36.6
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 7.0e-32 141.7 227 36.6
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 9.1e-32 141.4 224 37.1
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.2e-31 141.0 202 41.1
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.6e-31 140.6 222 39.2
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 2.0e-31 140.2 230 37.8
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 2.6e-31 139.8 214 40.2
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.6e-31 139.8 216 36.6
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 3.5e-31 139.4 230 39.1
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 1.7e-30 137.1 226 34.5
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.2e-30 136.7 225 36.4
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 2.2e-30 136.7 177 40.7
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 1.5e-29 134.0 202 40.1
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 1.9e-29 133.7 242 36.0
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 3.2e-29 132.9 229 38.0
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 5.5e-29 132.1 184 41.3
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 3.6e-28 129.4 227 35.7
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 4.7e-28 129.0 216 38.9
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 3.0e-27 126.3 200 36.5
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 6.7e-27 125.2 234 36.8
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.2e-26 124.4 215 37.7
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 2.0e-26 123.6 175 40.0
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 2.6e-26 123.2 205 36.1
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.3e-26 122.9 195 40.0
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 7.5e-26 121.7 230 37.0
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 5.3e-24 115.5 261 34.1
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 7.0e-24 115.2 225 36.0
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 7.0e-24 115.2 222 35.6
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 2.0e-23 113.6 303 31.0
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.7e-23 113.2 187 36.9
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.8e-22 109.4 171 41.5
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 3.8e-22 109.4 230 33.9
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 5.0e-22 109.0 219 34.2
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.4e-19 100.9 216 32.4
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.0e-19 99.4 120 48.3
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 4.0e-19 99.4 219 32.0
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 1.2e-18 97.8 188 34.6
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 2.6e-18 96.7 142 39.4
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 4.4e-18 95.9 211 34.1
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 5.9e-15 85.5 132 36.4
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.0e-14 84.7 155 38.1
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 2.3e-14 83.6 230 30.4
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 2.9e-14 83.2 193 30.6
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.9e-14 83.2 177 33.3
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.9e-14 83.2 177 33.3
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 3.8e-14 82.8 109 39.4
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 1.9e-13 80.5 138 37.7
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 5.5e-13 79.0 228 29.4
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.6e-12 77.4 139 34.5
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 2.1e-12 77.0 176 30.7
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.8e-12 76.6 188 29.8
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 8.0e-12 75.1 72 50.0
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 6.8e-11 72.0 101 36.6
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.3e-09 67.8 131 29.0
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 7.8e-07 58.5 63 39.7
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 1.0e-06 58.2 110 36.4
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 1.7e-06 57.4 116 34.5


User provided reference genes

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