Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p37370 Brassica napus HOM05D003129 ORTHO05D004326 4.3e-104 381.3 193 100.0
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 2.0e-64 249.6 198 68.7
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 8.2e-63 244.2 198 66.2
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.5e-59 233.4 198 62.6
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 1.5e-59 233.4 198 63.1
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 3.6e-58 228.8 198 61.6
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 5.7e-56 221.5 198 61.6
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 2.4e-54 216.1 198 60.1
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 2.2e-52 209.5 198 57.1
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 3.8e-52 208.8 198 57.1
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 1.5e-51 206.8 198 56.1
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 2.5e-51 206.1 198 56.1
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 3.2e-51 205.7 201 57.7
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 5.5e-51 204.9 198 56.6
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 7.2e-51 204.5 200 57.0
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.2e-50 203.8 198 56.1
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 1.2e-50 203.8 198 55.6
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 2.7e-50 202.6 198 56.6
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 2.7e-50 202.6 198 56.6
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 2.7e-50 202.6 198 56.6
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 2.7e-50 202.6 198 56.6
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 2.7e-50 202.6 198 56.6
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 3.6e-50 202.2 198 55.6
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 6.1e-50 201.4 198 56.6
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.0e-49 200.7 201 56.7
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 5.2e-49 198.4 200 55.0
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 5.7e-48 194.9 200 53.5
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 5.7e-48 194.9 200 53.5
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.2e-47 193.0 200 54.5
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.2e-47 193.0 200 54.5
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 2.2e-47 193.0 200 54.5
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.2e-47 193.0 200 54.5
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.8e-47 192.6 200 53.0
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 2.8e-47 192.6 200 52.5
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 2.8e-47 192.6 200 53.5
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 2.8e-47 192.6 200 53.0
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 2.8e-47 192.6 200 54.0
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 3.7e-47 192.2 200 52.5
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 6.3e-47 191.4 200 52.5
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 8.3e-47 191.0 200 53.5
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 1.1e-46 190.7 200 52.5
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 1.8e-46 189.9 200 51.5
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.4e-46 189.5 199 52.3
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 2.4e-46 189.5 200 53.0
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 2.4e-46 189.5 200 53.0
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 3.1e-46 189.1 202 51.5
Haze_06317 Corylus avellana HOM05D003129 ORTHO05D004326 4.1e-46 188.7 200 52.5
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 4.1e-46 188.7 200 52.5
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 5.3e-46 188.3 200 53.0
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 5.3e-46 188.3 200 52.0
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 7.0e-46 188.0 200 53.0
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 7.0e-46 188.0 200 52.5
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 7.0e-46 188.0 200 52.5
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 7.0e-46 188.0 200 53.0
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 9.1e-46 187.6 200 52.5
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 9.1e-46 187.6 200 52.0
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 9.1e-46 187.6 200 54.0
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 1.2e-45 187.2 200 52.5
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 1.2e-45 187.2 200 52.5
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.2e-45 187.2 200 52.0
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.6e-45 186.8 200 52.0
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 2.0e-45 186.4 200 52.5
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 2.0e-45 186.4 201 52.2
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 2.0e-45 186.4 199 54.3
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 3.5e-45 185.7 202 53.0
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 4.5e-45 185.3 200 53.0
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 4.5e-45 185.3 200 53.5
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 5.9e-45 184.9 200 52.5
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 7.7e-45 184.5 200 50.5
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 7.7e-45 184.5 200 50.5
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 7.7e-45 184.5 200 53.0
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 7.7e-45 184.5 200 52.5
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 1.0e-44 184.1 201 55.2
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 1.0e-44 184.1 200 50.5
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 1.7e-44 183.3 200 52.0
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 2.9e-44 182.6 199 51.8
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 3.8e-44 182.2 201 51.7
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 3.8e-44 182.2 180 56.1
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 6.5e-44 181.4 201 53.2
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 6.5e-44 181.4 200 51.5
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 1.5e-43 180.3 194 52.1
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 4.2e-43 178.7 199 51.8
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 4.2e-43 178.7 200 51.0
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 4.2e-43 178.7 201 52.2
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 5.5e-43 178.3 199 51.8
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 5.5e-43 178.3 201 52.7
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 5.5e-43 178.3 200 52.5
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 5.5e-43 178.3 197 50.8
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 5.5e-43 178.3 200 50.5
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 1.2e-42 177.2 201 53.2
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 2.7e-42 176.0 207 48.3
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 2.7e-42 176.0 198 51.0
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 2.7e-42 176.0 201 52.2
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 3.6e-42 175.6 201 51.7
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 3.6e-42 175.6 201 52.2
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 4.7e-42 175.3 205 48.3
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 6.1e-42 174.9 200 51.0
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 8.0e-42 174.5 201 51.2
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 1.8e-41 173.3 200 50.5
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 2.3e-41 172.9 163 60.7
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 3.0e-41 172.6 201 50.2
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 4.0e-41 172.2 202 51.0
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 4.0e-41 172.2 198 50.5
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 6.8e-41 171.4 183 53.6
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 1.2e-40 170.6 206 50.5
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 1.5e-40 170.2 201 49.8
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 1.5e-40 170.2 200 49.5
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 3.4e-40 169.1 198 49.0
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 5.7e-40 168.3 200 48.0
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 1.3e-39 167.2 198 49.0
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.7e-39 166.8 201 50.2
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 2.2e-39 166.4 203 50.7
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 3.7e-39 165.6 202 50.5
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 3.7e-39 165.6 200 47.5
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 3.7e-39 165.6 200 49.5
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 4.9e-39 165.2 196 46.9
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 4.9e-39 165.2 201 50.7
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 1.1e-38 164.1 212 44.8
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 1.8e-38 163.3 205 47.8
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 2.4e-38 162.9 198 49.5
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 4.5e-37 158.7 198 47.0
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 4.5e-37 158.7 205 44.4
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 4.5e-37 158.7 205 44.4
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 4.5e-37 158.7 205 43.9
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 1.3e-36 157.1 212 47.2
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.9e-36 156.0 186 50.0
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 2.9e-36 156.0 202 47.5
TPR.G40554 Trifolium pratense HOM05D003129 ORTHO05D004326 2.9e-36 156.0 181 49.2
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 3.8e-36 155.6 204 46.6
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 5.0e-36 155.2 205 43.9
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 5.0e-36 155.2 199 46.2
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 6.6e-36 154.8 200 46.5
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 6.6e-36 154.8 205 43.4
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 1.1e-35 154.1 200 44.0
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 2.5e-35 152.9 201 45.8
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 3.3e-35 152.5 217 42.4
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 5.5e-35 151.8 204 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 9.5e-35 151.0 198 45.5
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 2.8e-34 149.4 197 45.7
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 3.6e-34 149.1 205 42.9
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 8.0e-34 147.9 213 44.6
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.0e-33 147.5 162 53.7
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 2.3e-33 146.4 197 45.7
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 1.2e-32 144.1 198 44.4
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 2.6e-32 142.9 204 42.6
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 7.5e-32 141.4 169 48.5
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 6.3e-31 138.3 193 43.0
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 1.4e-30 137.1 126 60.3
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 1.3e-28 130.6 137 56.2
Oeu043092.1 Olea europaea HOM05D003129 ORTHO05D004326 2.9e-28 129.4 137 55.5
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 5.0e-28 128.6 180 41.7
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 6.6e-28 128.3 265 33.6
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 3.3e-27 125.9 337 30.3
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 4.3e-27 125.6 88 71.6
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 9.5e-27 124.4 167 48.5
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 4.7e-26 122.1 282 31.6
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 1.4e-25 120.6 111 61.3
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 1.4e-25 120.6 201 41.8
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 5.2e-25 118.6 325 32.0
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 2.2e-23 113.2 88 68.2
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 6.4e-23 111.7 90 63.3
Cc00_g29620 Coffea canephora HOM05D003129 ORTHO05D026744 2.4e-22 109.8 72 76.4
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 1.2e-21 107.5 68 75.0
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 1.3e-20 104.0 93 57.0
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 3.3e-19 99.4 189 36.5
BcaC05g26915 Brassica carinata HOM05D003129 ORTHO05D016405 5.8e-16 88.6 63 73.0
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 1.0e-12 77.8 114 38.6
Cpa.g.c47045 Carica papaya HOM05D003129 ORTHO05D000610 3.3e-11 72.8 79 49.4
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 9.5e-11 71.2 149 33.6
SHI34906 Sapria himalayana HOM05D003129 ORTHO05D000610 1.4e-09 67.4 79 45.6
Oeu062328.1 Olea europaea HOM05D003129 ORTHO05D000610 1.8e-09 67.0 122 36.1
Cc00_g30930 Coffea canephora HOM05D003129 ORTHO05D000610 2.6e-08 63.2 57 56.1
HanXRQChr07g0188631 Helianthus annuus HOM05D003129 ORTHO05D000610 3.4e-08 62.8 57 56.1
VMungo1215G1428 Vigna mungo HOM05D003129 ORTHO05D000610 3.4e-08 62.8 99 37.4
CDE08G1086 Ceratophyllum demersum HOM05D003129 ORTHO05D000610 2.4e-06 56.6 53 52.8


User provided reference genes

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