Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 9.3e-119 430.3 222 100.0
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 9.3e-119 430.3 222 100.0
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.1e-115 419.1 222 96.8
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.8e-114 416.0 221 96.4
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.8e-114 416.0 221 96.4
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.4e-113 411.8 222 94.1
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.9e-108 396.0 222 91.0
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.8e-107 392.1 222 89.6
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 8.4e-104 380.6 222 87.8
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.1e-98 363.6 222 85.1
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 4.1e-98 361.7 223 84.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.0e-96 354.8 222 82.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.8e-91 339.0 236 75.8
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.5e-87 325.9 223 72.6
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 9.4e-87 323.9 222 74.3
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.8e-85 319.7 222 70.3
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.9e-85 318.5 222 69.8
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.3e-83 313.5 220 68.2
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 69.8
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.3e-83 313.5 225 68.4
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.2e-83 312.8 221 68.8
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 4.8e-83 311.6 227 69.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.8e-82 309.7 222 67.6
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 2.4e-82 309.3 221 69.2
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.1e-82 308.5 220 68.6
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 4.1e-82 308.5 222 68.5
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.6e-81 306.6 219 68.5
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.0e-81 306.2 219 68.0
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.0e-81 306.2 219 68.9
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 4.5e-81 305.1 220 70.9
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 7.7e-81 304.3 221 66.5
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 67.6
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.7e-80 303.1 220 67.7
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.7e-80 303.1 219 68.5
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 2.2e-80 302.8 223 68.6
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 2.2e-80 302.8 219 67.6
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.9e-80 302.4 218 67.9
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 2.9e-80 302.4 221 66.5
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.0e-80 301.6 221 67.4
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.5e-80 300.8 219 67.1
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.1e-79 300.4 220 68.2
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.9e-79 299.7 222 64.9
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.5e-79 299.3 223 66.4
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 5.5e-79 298.1 221 65.2
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.5e-79 298.1 220 66.4
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 5.5e-79 298.1 221 66.1
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.2e-78 297.0 220 66.4
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 2.1e-78 296.2 221 66.5
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.1e-78 296.2 220 65.5
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.7e-78 295.8 221 65.6
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 67.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 65.5
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.6e-78 295.4 218 66.1
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 6.1e-78 294.7 221 65.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 8.0e-78 294.3 221 67.0
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 8.0e-78 294.3 220 66.8
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.0e-77 293.9 223 65.9
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.0e-77 293.9 220 65.0
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.4e-77 293.5 222 63.5
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.4e-77 293.5 221 65.6
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.8e-77 293.1 221 64.7
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 65.3
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 3.0e-77 292.4 219 65.3
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 4.0e-77 292.0 220 66.4
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 5.2e-77 291.6 222 64.9
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.2e-77 291.6 219 67.1
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.1e-76 290.4 226 65.0
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 2.6e-76 289.3 220 63.2
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.6e-76 289.3 220 64.1
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 2.6e-76 289.3 234 62.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 2.6e-76 289.3 220 64.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 3.3e-76 288.9 219 66.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.3e-76 288.9 218 66.5
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.4e-76 288.5 220 65.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 7.5e-76 287.7 217 63.6
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 9.7e-76 287.3 222 62.6
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.7e-76 287.3 225 61.3
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.7e-75 286.6 246 59.8
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.7e-75 286.6 218 65.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.7e-75 286.6 224 62.1
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 3.7e-75 285.4 221 62.0
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 3.7e-75 285.4 221 66.1
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.7e-75 285.4 224 63.4
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.4e-74 283.5 221 63.3
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 2.4e-74 282.7 220 64.1
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.2e-73 280.4 211 64.0
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.0e-73 279.6 220 64.5
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.0e-73 279.6 219 61.6
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 4.5e-73 278.5 215 64.2
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 5.9e-73 278.1 231 60.2
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 5.0e-72 275.0 225 60.9
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 6.5e-72 274.6 223 61.0
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.1e-71 273.9 240 59.2
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.5e-71 272.7 220 62.3
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.2e-71 271.2 220 60.9
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 9.4e-71 270.8 223 61.4
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 9.4e-71 270.8 220 60.0
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.2e-70 270.4 220 58.6
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 3.6e-70 268.9 263 55.1
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.8e-69 266.5 255 56.5
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 5.2e-69 265.0 220 58.2
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 2.0e-68 263.1 222 59.0
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 9.8e-68 260.8 220 58.6
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 3.7e-67 258.8 220 57.3
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.1e-66 255.8 184 64.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 7.0e-66 254.6 185 63.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 5.9e-65 251.5 249 54.6
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 7.7e-65 251.1 134 89.6
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-64 250.8 154 70.8
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.7e-64 250.0 221 59.7
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 8.5e-64 247.7 215 58.1
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.2e-63 245.7 218 57.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 2.1e-62 243.0 206 56.8
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 9.8e-60 234.2 221 55.7
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.0e-57 226.5 220 54.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.0e-56 224.2 169 60.4
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.0e-56 224.2 191 59.7
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 5.6e-55 218.4 235 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 9.8e-52 207.6 251 49.8
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.1e-50 202.2 215 49.8
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.0e-49 199.9 120 74.2
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.2e-46 188.3 221 47.1
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.3e-45 186.4 235 43.0
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.1e-45 186.0 111 73.9
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.8e-37 160.2 251 38.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.8e-37 158.3 156 49.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.9e-35 152.1 107 61.7
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.6e-30 137.1 178 43.3
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 6.6e-24 115.2 243 35.4
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.1e-10 71.2 89 48.3
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.2e-10 69.7 41 78.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.8e-08 63.9 42 66.7
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 3.0e-08 63.2 210 27.1
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 6.7e-08 62.0 43 65.1
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.1e-06 57.0 34 76.5
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 2.8e-06 56.6 188 23.4
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 4.8e-06 55.8 166 25.3
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 8.1e-06 55.1 37 78.4


User provided reference genes

Program Settings