Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1550.0 815 100.0
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1490.3 815 96.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1449.5 815 93.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1446.4 815 93.5
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1446.4 815 93.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1319.7 821 86.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 0.0e+00 1234.2 833 79.7
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 0.0e+00 1203.7 829 79.4
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1189.1 827 78.5
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1181.4 834 77.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1181.0 834 77.6
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1169.5 835 77.0
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 0.0e+00 1165.2 833 76.6
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1162.5 835 76.8
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 0.0e+00 1152.1 836 75.7
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 0.0e+00 1138.3 849 74.3
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 0.0e+00 1101.3 831 73.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 7.5e-267 924.1 605 81.0
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 4.1e-257 891.7 845 59.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 2.1e-253 879.4 834 61.9
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 7.0e-188 661.8 713 52.0
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.2e-186 656.8 794 48.4
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.1e-185 654.4 804 47.4
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 5.7e-182 642.1 748 49.9
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 6.5e-178 628.6 866 44.6
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.2e-177 626.3 882 44.8
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.2e-177 625.2 868 44.6
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.6e-176 622.9 719 48.5
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 8.0e-176 621.7 788 47.1
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.8e-175 620.5 847 44.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.8e-175 618.6 712 49.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.0e-174 617.1 716 49.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.2e-173 613.6 877 44.0
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.7e-173 612.8 821 45.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.8e-172 610.5 813 45.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.4e-172 609.0 855 44.7
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.5e-171 606.3 687 50.1
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.6e-168 596.3 861 44.0
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.8e-167 594.0 647 51.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.8e-167 594.0 827 44.5
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 5.2e-167 592.4 853 43.8
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.2e-166 591.3 865 42.0
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.7e-165 587.4 807 44.0
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.8e-165 586.6 855 42.2
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 6.3e-165 585.5 732 47.5
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 8.3e-165 585.1 855 42.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.4e-164 583.6 855 42.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 7.0e-164 582.0 784 44.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 6.6e-162 575.5 775 45.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 8.6e-162 575.1 774 44.1
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.9e-161 573.9 852 42.7
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 5.6e-161 572.4 715 47.1
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.6e-160 570.9 676 48.8
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.1e-160 570.5 822 42.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.4e-159 567.8 705 47.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 4.4e-158 562.8 730 45.2
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 7.5e-158 562.0 720 45.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 4.9e-157 559.3 702 46.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 6.4e-157 558.9 751 46.1
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.9e-156 557.4 800 42.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.4e-156 555.8 853 41.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.2e-155 554.7 662 47.3
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.0e-155 553.9 704 46.4
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 2.0e-155 553.9 819 41.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.7e-155 553.5 833 42.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.7e-155 553.5 794 44.1
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.7e-155 553.5 673 46.4
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 6.0e-155 552.4 673 46.2
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 7.8e-155 552.0 654 48.2
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 7.8e-155 552.0 812 42.6
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.0e-154 551.6 766 44.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 6.6e-154 548.9 696 46.1
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.2e-152 544.7 832 40.5
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.6e-152 543.1 818 41.2
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 4.7e-152 542.7 679 46.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 6.2e-152 542.3 815 41.6
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.2e-152 542.3 654 47.1
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.1e-151 541.6 709 44.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.1e-151 541.6 699 46.9
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.4e-150 536.2 851 41.4
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 8.3e-149 531.9 727 43.1
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 7.8e-147 525.4 769 42.1
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 3.3e-145 520.0 774 42.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.6e-145 519.2 595 49.2
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.2e-144 518.1 721 45.4
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.6e-144 517.7 620 47.9
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 2.8e-144 516.9 675 44.7
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 4.0e-143 513.1 700 45.3
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 2.6e-142 510.4 858 38.3
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.8e-142 509.2 888 39.5
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.4e-140 504.6 750 43.1
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.6e-139 501.1 655 44.6
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 4.6e-139 499.6 688 43.3
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.9e-138 496.5 537 51.6
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 5.1e-138 496.1 671 44.1
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.6e-136 491.1 740 41.6
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 4.7e-136 489.6 928 38.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 2.2e-133 480.7 645 45.3
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 2.9e-133 480.3 892 37.0
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 6.0e-131 472.6 830 38.7
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.8e-127 461.1 674 42.4
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.3e-125 454.9 671 41.4
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.3e-121 439.9 822 36.7
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.4e-119 434.9 714 39.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.0e-114 417.2 643 40.4
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 7.4e-113 412.5 529 44.6
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.4e-113 412.5 652 40.0
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.1e-112 411.0 652 40.0
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-105 388.7 535 43.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-105 388.7 535 43.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 2.8e-104 384.0 676 37.1
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-102 378.3 691 35.6
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.1e-95 355.5 453 47.0
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.1e-95 353.6 447 46.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-94 351.3 355 53.2
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 7.2e-92 342.8 556 41.2
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.8e-90 338.2 598 38.3
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.3e-90 337.8 706 35.6
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.5e-89 335.1 541 41.8
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.4e-87 327.8 701 34.5
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.0e-86 324.7 492 41.1
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-81 308.5 694 32.6
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-81 308.5 694 32.6
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.8e-80 304.3 403 45.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.2e-80 302.8 403 45.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.7e-78 296.2 338 47.3
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.8e-71 275.0 275 52.7
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 7.2e-68 263.1 859 27.5
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.5e-65 255.4 246 54.5
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.4e-65 253.8 853 27.8
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.0e-59 233.0 429 38.2
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 8.3e-56 223.0 304 47.0
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.0e-53 213.8 225 50.2
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.6e-51 208.8 147 76.2
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.4e-50 205.7 383 35.8
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.2e-46 192.6 332 37.3
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 6.6e-45 186.8 618 28.5
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 4.7e-43 180.6 109 83.5
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 8.0e-43 179.9 109 82.6
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.8e-42 178.7 195 48.7
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 9.8e-41 172.9 123 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.4e-40 170.2 341 38.1
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 2.3e-37 161.8 142 56.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.9e-37 161.0 261 40.2
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 5.6e-36 157.1 139 56.8
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-34 151.0 153 51.6
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 2.6e-33 148.3 87 83.9
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 3.4e-33 147.9 82 85.4
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 4.9e-32 144.1 82 84.1
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 4.9e-32 144.1 82 84.1
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.2e-31 141.4 82 82.9
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.0e-30 137.1 294 34.7
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.0e-30 137.1 160 50.0
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.3e-29 135.2 211 43.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 3.0e-29 134.8 117 58.1
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.9e-29 134.4 202 45.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 1.1e-28 132.9 72 88.9
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 2.5e-28 131.7 72 87.5
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.3e-28 131.3 180 41.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-27 129.4 282 34.8
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-27 129.4 240 35.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.0e-26 124.4 221 37.6
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 6.8e-26 123.6 121 54.5
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.3e-24 119.4 237 36.3
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.7e-24 117.9 140 47.1
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.4e-23 115.2 151 43.0
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 2.1e-19 102.1 132 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.5e-17 95.9 129 41.1
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.9e-17 93.2 181 37.0
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 9.3e-15 86.7 110 50.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.0e-13 83.2 80 57.5
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 5.1e-13 80.9 90 50.0
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 8.7e-13 80.1 77 57.1
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.1e-12 79.7 90 50.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-12 79.7 172 34.9
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.4e-10 72.8 80 51.2
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.4e-10 72.8 80 50.0
BcaB08g34815 Brassica carinata HOM05D003594 ORTHO05D004268 1.5e-09 69.3 44 72.7
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 2.0e-09 68.9 81 48.1
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.8e-09 67.4 75 44.0
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 6.0e-06 57.4 108 39.8
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-06 57.0 58 46.6


User provided reference genes

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