Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.4e-108 396.4 202 100.0
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.2e-72 276.9 168 84.5
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 6.2e-61 238.0 156 82.1
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.2e-56 223.8 175 69.1
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 7.8e-56 221.1 138 84.8
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.0e-51 206.5 182 60.4
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 7.1e-49 198.0 148 66.9
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.0e-47 194.1 119 84.9
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 3.0e-47 192.6 118 85.6
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.8e-45 186.0 120 79.2
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.4e-41 172.9 179 52.5
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 3.2e-41 172.6 120 79.2
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 7.8e-40 167.9 119 73.9
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.3e-39 167.2 119 74.8
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 3.9e-39 165.6 119 75.6
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.9e-38 163.3 119 74.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.9e-38 163.3 111 73.0
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 3.3e-38 162.5 119 73.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 3.3e-38 162.5 119 73.9
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 3.3e-38 162.5 119 73.9
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.6e-37 160.2 112 69.6
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.8e-37 158.7 112 69.6
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 8.1e-37 157.9 112 69.6
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.1e-36 157.5 112 68.8
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.4e-36 157.1 112 68.8
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 9.0e-36 154.5 114 67.5
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.5e-35 153.7 109 70.6
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 3.4e-35 152.5 108 72.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 4.4e-35 152.1 186 46.8
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 4.4e-35 152.1 165 50.9
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.3e-34 150.6 115 67.0
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 2.2e-34 149.8 109 69.7
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.1e-33 147.5 115 65.2
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.4e-33 147.1 109 67.9
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.4e-33 147.1 107 72.0
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.4e-33 146.4 109 66.1
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 3.2e-33 146.0 109 67.0
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.2e-33 145.6 109 67.0
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.2e-33 145.6 109 67.0
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 4.2e-33 145.6 111 69.4
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 7.1e-33 144.8 109 65.1
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.7e-32 142.9 106 66.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 4.6e-32 142.1 107 66.4
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 7.8e-32 141.4 109 63.3
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.3e-31 140.6 110 63.6
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 5.1e-31 138.7 110 64.5
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 6.6e-31 138.3 132 60.6
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.1e-30 137.5 111 60.4
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-30 136.7 107 65.4
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-30 136.7 107 65.4
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.6e-30 135.2 107 63.6
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 5.6e-30 135.2 117 62.4
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.3e-29 134.0 116 56.0
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.3e-29 134.0 109 60.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.3e-29 134.0 100 66.0
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 1.6e-29 133.7 110 60.9
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 4.0e-28 129.0 109 61.5
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 4.0e-28 129.0 109 61.5
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 6.9e-28 128.3 98 68.4
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.4e-27 125.9 97 62.9
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 4.5e-27 125.6 97 58.8
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.4e-26 121.7 110 57.3
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.4e-26 121.7 110 57.3
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 8.4e-26 121.3 110 58.2
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.2e-25 119.0 116 54.3
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 4.2e-25 119.0 105 56.2
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 5.4e-25 118.6 109 56.9
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 7.1e-25 118.2 78 70.5
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.6e-24 117.1 109 57.8
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.0e-23 114.4 111 50.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.8e-23 113.6 99 56.6
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 2.3e-23 113.2 109 54.1
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 2.3e-23 113.2 77 71.4
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 3.0e-23 112.8 78 69.2
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 3.0e-23 112.8 79 67.1
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 5.1e-23 112.1 107 57.0
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 5.1e-23 112.1 111 54.1
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 5.1e-23 112.1 111 54.1
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 5.1e-23 112.1 77 70.1
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.1e-22 110.9 109 53.2
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 1.9e-22 110.2 109 53.2
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.3e-22 109.4 114 50.9
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 4.3e-22 109.0 88 62.5
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 7.4e-22 108.2 105 56.2
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 9.6e-22 107.8 79 65.8
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.6e-21 107.1 156 39.1
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.6e-21 107.1 72 69.4
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.6e-21 107.1 77 68.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 4.8e-21 105.5 107 53.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 4.8e-21 105.5 77 67.5
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.1e-20 104.4 78 62.8
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.1e-20 104.4 75 66.7
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 1.1e-20 104.4 75 69.3
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 1.8e-20 103.6 82 70.7
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.1e-20 102.8 79 60.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 4.0e-20 102.4 79 62.0
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-20 102.1 132 50.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 9.0e-20 101.3 105 52.4
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.5e-19 100.5 76 65.8
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.6e-19 99.8 98 53.1
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 2.6e-19 99.8 79 59.5
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.4e-19 99.4 79 59.5
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 4.5e-19 99.0 111 50.5
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.0e-18 97.8 84 53.6
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-18 97.1 83 59.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 2.9e-18 96.3 79 57.0
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 4.9e-18 95.5 72 65.3
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 4.9e-18 95.5 79 58.2
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 5.5e-17 92.0 66 68.2
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.7e-16 89.7 74 55.4
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 4.6e-16 89.0 73 57.5
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 5.1e-15 85.5 73 52.1
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 8.7e-15 84.7 74 48.6
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.1e-14 84.3 77 55.8
HPP92_001621 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.5e-14 84.0 64 62.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.7e-13 79.3 73 49.3
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.4e-12 77.4 52 65.4
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 6.9e-12 75.1 49 67.3
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 7.6e-11 71.6 60 60.0
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 4.2e-09 65.9 180 27.8
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 2.1e-08 63.5 171 28.1
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 2.7e-08 63.2 187 25.7
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 6.1e-08 62.0 164 27.4
Gohir.D03G178400 Gossypium hirsutum HOM05D005622 ORTHO05D002854 7.9e-08 61.6 170 25.3
Gorai.006G190400 Gossypium raimondii HOM05D005622 ORTHO05D002854 1.8e-07 60.5 170 25.3
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 2.3e-07 60.1 170 24.7
ECA240G1752 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.0e-07 59.7 153 31.4
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 5.1e-07 58.9 168 26.8
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 5.1e-07 58.9 178 25.8
Gohir.D09G168800 Gossypium hirsutum HOM05D005622 ORTHO05D002854 5.1e-07 58.9 170 25.3
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 6.7e-07 58.5 168 26.8
MD09G1267500 Malus domestica HOM05D005622 ORTHO05D002854 6.7e-07 58.5 172 26.7
Duzib248G0892 Durio zibethinus HOM05D005622 ORTHO05D002854 8.7e-07 58.2 169 24.3
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 8.7e-07 58.2 170 25.3
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 8.7e-07 58.2 184 26.6
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 1.1e-06 57.8 168 26.2
Gohir.D06G192800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 1.1e-06 57.8 174 28.7
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 1.1e-06 57.8 162 30.9
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 1.5e-06 57.4 168 26.2
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 1.5e-06 57.4 168 26.2
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 1.5e-06 57.4 168 26.2
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.5e-06 57.4 138 26.8
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.5e-06 57.4 181 27.1
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 1.9e-06 57.0 172 24.4
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 1.9e-06 57.0 181 27.6
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.9e-06 57.0 137 27.7
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 2.5e-06 56.6 171 28.7
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 2.5e-06 56.6 171 28.7
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 2.5e-06 56.6 172 24.4
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 2.5e-06 56.6 181 27.1
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.3e-06 56.2 138 26.8
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 3.3e-06 56.2 198 25.3
CsaV3_3G041130 Cucumis sativus L. HOM05D000891 ORTHO05D011021 3.3e-06 56.2 164 25.0
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 3.3e-06 56.2 179 28.5
SGA_v2.0_scaffold274G46481 Striga asiatica HOM05D000162 ORTHO05D000090 3.3e-06 56.2 136 28.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 4.3e-06 55.8 181 24.9
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 4.3e-06 55.8 136 27.9
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 4.3e-06 55.8 120 28.3
PGR102G1993 Punica granatum HOM05D000162 ORTHO05D000090 4.3e-06 55.8 52 48.1
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 5.7e-06 55.5 103 33.0
TAR628G0602 Trochodendron aralioides HOM05D006556 ORTHO05D008146 5.7e-06 55.5 112 30.4
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 7.4e-06 55.1 174 25.3
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 7.4e-06 55.1 162 30.2
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 9.7e-06 54.7 181 25.4
Duzib160G0410 Durio zibethinus HOM05D000891 ORTHO05D000761 9.7e-06 54.7 182 27.5
Gorai.009G455800 Gossypium raimondii HOM05D005622 ORTHO05D002854 9.7e-06 54.7 170 24.7
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 9.7e-06 54.7 127 28.3
GSVIVG01019408001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.7e-06 54.7 140 28.6


User provided reference genes

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