Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 2.4e-196 689.9 812 100.0
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.4e-185 654.1 812 97.9
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 2.3e-146 523.9 818 89.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 9.5e-145 518.5 817 88.5
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 2.8e-144 516.9 817 88.4
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 2.8e-144 516.9 817 88.4
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 8.3e-133 478.8 820 85.0
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 3.3e-129 466.8 823 85.1
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.5e-121 441.4 821 77.8
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 8.4e-117 425.6 815 83.8
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 7.1e-116 422.5 824 81.8
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.1e-111 408.7 821 78.3
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.6e-99 368.2 799 81.1
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 4.6e-99 366.7 231 82.7
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 6.0e-99 366.3 231 82.7
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 5.1e-98 363.2 231 82.3
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 9.3e-92 342.4 810 78.3
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.1e-63 249.2 785 75.2
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.1e-63 249.2 759 78.7
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.4e-63 248.8 773 71.5
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.8e-63 248.4 778 75.8
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.7e-61 241.9 785 74.6
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.9e-61 241.1 724 79.0
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.0e-58 232.6 698 76.4
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.4e-58 232.3 688 83.0
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.8e-58 231.9 692 79.9
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.7e-56 225.3 776 72.4
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.7e-56 224.2 691 77.3
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.4e-55 222.2 698 73.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.2e-54 219.2 691 77.9
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 1.2e-54 219.2 689 80.4
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.6e-54 218.8 309 75.7
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 4.5e-54 217.2 294 79.6
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 5.9e-54 216.9 775 72.9
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 7.7e-54 216.5 694 75.8
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.0e-53 216.1 310 74.2
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-53 216.1 792 66.7
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.3e-53 215.7 694 80.3
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 2.9e-53 214.5 309 74.8
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 5.0e-53 213.8 152 70.4
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.0e-53 213.8 748 74.3
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 5.0e-53 213.8 309 76.4
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 6.5e-53 213.4 693 78.8
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.5e-53 213.4 775 72.8
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 8.5e-53 213.0 149 73.2
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 4.2e-52 210.7 153 69.3
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 5.5e-52 210.3 147 72.8
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 7.2e-52 209.9 306 63.1
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.6e-51 208.8 238 52.5
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.7e-51 208.0 309 72.5
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.7e-51 208.0 306 67.3
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.7e-51 207.2 151 62.9
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.0e-51 206.5 339 66.1
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.0e-50 206.1 280 59.3
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.0e-50 206.1 727 69.9
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.4e-50 205.7 310 74.2
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.4e-50 205.7 152 67.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 3.0e-50 204.5 803 70.4
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.2e-50 203.8 151 62.9
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 5.2e-50 203.8 150 68.0
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.8e-50 203.0 775 72.5
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.2e-49 202.6 698 72.1
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.2e-49 202.6 185 61.6
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 2.0e-49 201.8 153 62.1
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 2.6e-49 201.4 310 67.4
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 3.4e-49 201.1 209 60.3
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 7.5e-49 199.9 802 70.4
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 7.5e-49 199.9 312 65.4
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.8e-48 198.0 126 76.2
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 3.7e-48 197.6 670 74.3
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 4.8e-48 197.2 342 73.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 6.3e-48 196.8 408 65.4
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.8e-47 195.3 670 73.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.1e-47 194.5 279 71.3
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 7.0e-47 193.4 151 60.9
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 7.0e-47 193.4 308 71.8
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 7.0e-47 193.4 308 71.8
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.6e-46 192.2 180 57.2
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.0e-46 191.8 286 75.9
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 2.7e-46 191.4 338 62.1
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 3.5e-46 191.0 670 73.4
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 7.7e-46 189.9 304 66.4
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 5.0e-45 187.2 309 59.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 5.0e-45 187.2 152 63.2
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.5e-45 186.8 667 70.2
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 8.6e-45 186.4 306 72.2
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 8.6e-45 186.4 150 63.3
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 2.5e-44 184.9 672 72.5
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.5e-44 184.9 151 63.6
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 5.5e-44 183.7 786 67.6
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.1e-43 181.8 153 57.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 2.1e-43 181.8 127 70.1
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 6.1e-43 180.3 636 79.6
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.4e-42 179.1 281 55.9
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.4e-42 179.1 127 68.5
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.3e-42 178.3 150 61.3
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 3.4e-41 174.5 121 93.4
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 4.4e-41 174.1 122 70.5
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 2.8e-40 171.4 108 77.8
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.6e-38 165.6 253 81.4
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 4.5e-38 164.1 119 74.8
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.7e-37 162.2 159 54.7
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 3.8e-37 161.0 287 72.8
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 1.5e-33 149.1 282 62.1
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.7e-32 144.4 291 59.5
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 4.9e-32 144.1 108 63.9
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.7e-29 135.6 149 48.3
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.0e-29 134.8 312 57.7
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.5e-28 131.7 110 75.5
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 9.5e-28 129.8 109 59.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.0e-25 122.1 109 56.0
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 2.6e-25 121.7 88 93.2
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 5.8e-25 120.6 107 75.7
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.9e-24 118.2 114 51.8
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.4e-23 115.9 75 74.7
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 7.0e-23 113.6 106 52.8
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 9.2e-23 113.2 80 66.2
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.6e-22 112.5 111 48.6
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 3.5e-22 111.3 110 51.8
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.0e-21 109.8 100 54.0
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 3.0e-21 108.2 109 70.6
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.0e-17 95.5 79 55.7
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.7e-14 85.1 72 56.9
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 6.6e-13 80.5 61 60.7
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 8.6e-13 80.1 59 61.0
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.3e-12 77.8 70 55.7
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.8e-10 72.4 56 64.3
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.4e-10 72.0 47 74.5
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.3e-08 66.2 108 30.6
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 2.9e-08 65.1 82 41.5
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.4e-07 62.8 104 33.7
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 2.1e-06 58.9 120 29.2
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 2.7e-06 58.5 136 28.7
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 3.5e-06 58.2 120 30.8
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 4.6e-06 57.8 55 56.4
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 7.8e-06 57.0 40 62.5
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 7.8e-06 57.0 91 34.1
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 7.8e-06 57.0 103 31.1


User provided reference genes

Program Settings