Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 2.7e-65 251.9 132 100.0
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 2.7e-65 251.9 132 100.0
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 2.7e-65 251.9 132 100.0
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 2.7e-65 251.9 132 100.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 7.8e-65 250.4 132 99.2
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 5.6e-63 244.2 132 96.2
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 7.3e-63 243.8 133 97.7
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.1e-62 242.3 132 95.5
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 6.2e-62 240.7 132 97.7
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 6.2e-62 240.7 132 97.7
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 6.2e-62 240.7 132 97.7
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 6.2e-62 240.7 132 97.7
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 1.1e-61 240.0 132 96.2
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 3.1e-61 238.4 132 95.5
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 3.1e-61 238.4 132 96.2
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 4.0e-61 238.0 132 96.2
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 2.6e-60 235.3 132 91.7
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 2.4e-58 228.8 132 94.7
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 3.2e-58 228.4 132 94.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 2.7e-57 225.3 132 87.1
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.3e-56 223.0 132 89.4
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 3.9e-56 221.5 134 88.8
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 9.6e-55 216.9 132 87.9
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 9.6e-55 216.9 132 87.9
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.3e-54 216.5 132 85.6
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.6e-54 216.1 132 85.6
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 2.1e-54 215.7 132 84.8
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 2.8e-54 215.3 132 84.1
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.7e-54 214.9 132 84.8
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 4.8e-54 214.5 132 85.6
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.1e-54 213.8 132 84.1
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 8.1e-54 213.8 132 83.3
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 8.1e-54 213.8 132 85.6
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.1e-53 213.4 132 87.1
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 1.4e-53 213.0 132 85.6
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 85.6
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 9.0e-53 210.3 132 84.8
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 1.2e-52 209.9 132 82.6
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.2e-52 209.9 132 81.8
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.5e-52 209.5 132 84.8
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 1.5e-52 209.5 132 84.8
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.5e-52 209.5 132 81.8
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 2.0e-52 209.1 132 84.8
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 2.6e-52 208.8 132 84.1
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 2.6e-52 208.8 132 81.8
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 85.5
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 4.5e-52 208.0 132 81.8
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 5.8e-52 207.6 132 82.6
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 5.8e-52 207.6 132 82.6
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.6e-52 207.2 132 84.1
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 7.6e-52 207.2 131 80.9
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 9.9e-52 206.8 132 81.8
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 82.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 81.8
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 81.8
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 85.0
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 83.3
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 83.3
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 78.8
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.8e-51 204.9 131 82.4
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 3.8e-51 204.9 131 82.4
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 3.8e-51 204.9 132 81.1
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 85.5
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 81.8
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.4e-50 203.0 134 81.3
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.4e-50 203.0 131 80.9
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 82.6
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.9e-50 202.6 132 79.5
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 82.7
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 82.7
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.9e-50 202.6 132 79.5
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 2.4e-50 202.2 132 83.3
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.2e-50 201.8 131 84.0
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.2e-50 201.8 131 81.7
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 4.2e-50 201.4 134 79.1
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 4.2e-50 201.4 132 81.1
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 5.5e-50 201.1 130 81.5
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 5.5e-50 201.1 132 83.3
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.5e-50 201.1 131 84.0
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 7.1e-50 200.7 132 81.1
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 7.1e-50 200.7 132 80.3
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 9.3e-50 200.3 133 80.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.2e-49 199.9 132 80.3
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.6e-49 199.5 133 80.5
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.6e-49 199.5 133 80.5
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.1e-49 199.1 133 78.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 2.7e-49 198.7 135 82.2
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.7e-49 198.7 135 82.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.7e-49 198.7 132 81.8
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 3.5e-49 198.4 131 82.4
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.5e-49 198.4 131 82.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 6.0e-49 197.6 132 78.0
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 6.0e-49 197.6 133 82.0
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 80.9
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 80.9
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 1.8e-48 196.1 130 76.9
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.8e-48 196.1 132 78.8
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.3e-48 195.7 132 78.0
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 2.3e-48 195.7 135 79.3
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.0e-48 195.3 133 78.2
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 78.8
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 3.9e-48 194.9 131 79.4
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 6.7e-48 194.1 133 80.5
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 6.7e-48 194.1 132 76.5
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 78.0
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.9e-47 192.6 131 77.1
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.3e-47 191.8 133 80.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 3.3e-47 191.8 134 79.9
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 9.6e-47 190.3 131 77.9
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 9.6e-47 190.3 131 76.3
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 9.6e-47 190.3 134 77.6
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.3e-46 189.9 133 78.9
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.6e-46 189.5 133 76.7
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 6.2e-46 187.6 133 78.2
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.8e-45 186.0 132 75.8
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.1e-45 185.3 130 74.6
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 3.1e-45 185.3 132 75.0
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.0e-44 182.6 125 77.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.6e-44 182.2 131 75.6
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 3.4e-44 181.8 130 74.6
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.5e-44 181.4 130 73.1
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 4.5e-44 181.4 131 75.6
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.2e-43 179.1 105 89.5
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.2e-43 179.1 164 63.4
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.8e-43 178.3 134 73.9
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 3.8e-43 178.3 138 72.5
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 2.1e-41 172.6 102 87.3
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.7e-41 172.2 132 71.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 6.0e-41 171.0 131 69.5
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 4.3e-39 164.9 125 68.8
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.6e-36 155.6 125 67.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.9e-36 154.5 129 69.0
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 2.9e-35 152.1 131 66.4
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 3.2e-34 148.7 128 64.1
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.5e-34 147.9 130 65.4
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 6.1e-33 144.4 130 66.2
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.3e-31 138.7 131 58.0
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 5.9e-28 127.9 121 62.0
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 6.7e-24 114.4 128 51.6
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 6.9e-21 104.4 79 70.9
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.0e-20 102.8 114 50.9
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 4.8e-14 81.6 69 66.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.6e-12 75.9 48 79.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.6e-09 66.6 93 41.9
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 5.2e-08 61.6 78 43.6


User provided reference genes

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