Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p35990 Brassica napus HOM05D010390 ORTHO05D012282 7.2e-134 480.7 265 100.0
BraA09t39123Z Brassica rapa HOM05D001466 ORTHO05D001452 3.7e-114 415.2 262 89.3
C07p37250 Brassica napus HOM05D010390 ORTHO05D012282 4.7e-109 398.3 268 84.7
BolC7t44235H Brassica oleracea HOM05D010390 ORTHO05D012282 2.3e-108 396.0 270 83.7
BolC5t31674H Brassica oleracea HOM05D010390 ORTHO05D012282 3.5e-96 355.5 279 79.2
C05p29440 Brassica napus HOM05D001466 ORTHO05D001452 1.2e-91 340.5 274 77.7
BcaB07g32656 Brassica carinata HOM05D010390 ORTHO05D012282 9.5e-70 267.7 276 59.1
Sp1g26300 Schrenkiella parvula HOM05D010390 ORTHO05D012282 1.8e-68 263.5 283 63.3
BcaB07g32681 Brassica carinata HOM05D010390 ORTHO05D012282 5.1e-47 192.2 143 72.7
BcaNung05958 Brassica carinata HOM05D010390 ORTHO05D012282 6.4e-42 175.3 172 65.1
Thhalv10009879m.g Eutrema salsugineum HOM05D010390 ORTHO05D012282 1.2e-40 171.0 228 54.4
Carub.0001s2868 Capsella rubella HOM05D010390 ORTHO05D012282 4.8e-29 132.5 190 43.7
AT1G30473 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 8.2e-29 131.7 231 40.3
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 2.6e-19 100.1 233 33.5
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 1.9e-17 94.0 257 31.5
Aa31LG1G15860 Aethionema arabicum HOM05D010390 ORTHO05D012282 3.2e-17 93.2 248 30.6
BcaB07g32655 Brassica carinata HOM05D010390 ORTHO05D012282 1.0e-15 88.2 56 75.0
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 1.5e-14 84.3 249 31.3
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 4.1e-12 76.3 219 30.1
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 9.1e-12 75.1 232 29.7
BraA04t18955Z Brassica rapa HOM05D000489 ORTHO05D000372 1.2e-11 74.7 232 29.7
AL1G44490 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 5.9e-11 72.4 241 36.9
A04p35220 Brassica napus HOM05D000489 ORTHO05D000372 7.7e-11 72.0 232 29.3
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 1.7e-10 70.9 75 42.7
CARHR231270 Cardamine hirsuta HOM05D010390 ORTHO05D012282 1.1e-09 68.2 70 45.7
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 1.6e-08 64.3 72 41.7
THA.LOC104802224 Tarenaya hassleriana HOM05D010390 ORTHO05D012282 1.6e-08 64.3 87 41.4
Sabra04G0095800 Salix brachista HOM05D010143 ORTHO05D010368 3.6e-08 63.2 67 41.8
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 1.0e-07 61.6 64 37.5
CSS0027010 Camellia sinensis var. sinensis HOM05D030391 ORTHO05D010368 1.0e-07 61.6 65 43.1
TWI12G0073 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.0e-07 61.6 67 41.8
TWI56G1360 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.3e-07 60.5 67 41.8
Prupe.8G245300 Prunus persica HOM05D019654 ORTHO05D010368 3.0e-07 60.1 75 40.0
Thecc.03G139400 Theobroma cacao HOM05D014780 ORTHO05D010368 5.1e-07 59.3 70 41.4
A03p34030 Brassica napus HOM05D000520 ORTHO05D012153 8.8e-07 58.5 74 39.2
BraA03t12577Z Brassica rapa HOM05D000520 ORTHO05D012153 8.8e-07 58.5 74 39.2
CDE05G3676 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 8.8e-07 58.5 68 41.2
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.8e-07 58.5 66 40.9
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 8.8e-07 58.5 65 41.5
Sabra09G0097300 Salix brachista HOM05D000057 ORTHO05D010368 8.8e-07 58.5 63 46.0
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 1.1e-06 58.2 66 42.4
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 1.5e-06 57.8 66 40.9
BcaB04g19277 Brassica carinata HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
BcaB04g21451 Brassica carinata HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
BNapus_Darmor_BZH_scaffold_114p00230 Brassica napus HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
C03p41430 Brassica napus HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
BolC1t05705H Brassica oleracea HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
BraSC132t45515Z Brassica rapa HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
Thhalv10020397m.g Eutrema salsugineum HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 1.5e-06 57.8 66 42.4
Sp3g04070 Schrenkiella parvula HOM05D000520 ORTHO05D012153 1.5e-06 57.8 67 38.8
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 2.0e-06 57.4 66 40.9
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 2.0e-06 57.4 66 40.9
AL3G15650 Arabidopsis lyrata HOM05D000520 ORTHO05D012153 2.6e-06 57.0 67 38.8
Carub.0003s0447 Capsella rubella HOM05D000520 ORTHO05D012153 2.6e-06 57.0 67 38.8
CARHR079560 Cardamine hirsuta HOM05D000520 ORTHO05D012153 2.6e-06 57.0 67 38.8
Psat1g183400 Pisum sativum HOM05D000520 ORTHO05D000399 2.6e-06 57.0 66 40.9
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 2.6e-06 57.0 63 39.7
Actinidia24975 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.3e-06 56.6 65 40.0
Aa31LG5G15600 Aethionema arabicum HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
AT3G05220 Arabidopsis thaliana HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
MSTRG.24755 Avicennia marina HOM05D000520 ORTHO05D000399 3.3e-06 56.6 66 42.4
BcaC05g30010 Brassica carinata HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
A05p42360 Brassica napus HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
C05p61970 Brassica napus HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
BolC5t34857H Brassica oleracea HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
BraA05t23015Z Brassica rapa HOM05D000520 ORTHO05D012153 3.3e-06 56.6 67 37.3
CDE11G0193 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 3.3e-06 56.6 68 39.7
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 3.3e-06 56.6 64 42.2
Duzib138G0353 Durio zibethinus HOM05D016083 ORTHO05D010368 3.3e-06 56.6 69 37.7
Solyc01g098760.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 3.3e-06 56.6 65 41.5
Sopen01g042290 Solanum pennellii HOM05D000520 ORTHO05D000399 3.3e-06 56.6 65 41.5
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 4.4e-06 56.2 69 39.1
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 4.4e-06 56.2 66 39.4
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 4.4e-06 56.2 66 39.4
THA.LOC104805601 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.4e-06 56.2 77 29.9
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 4.4e-06 56.2 63 44.4
MSTRG.3996 Avicennia marina HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 37.9
CAN.G1132.7 Capsicum annuum HOM05D000520 ORTHO05D000399 5.7e-06 55.8 65 40.0
CAN.G274.23 Capsicum annuum HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 40.9
Dinv38396 Davidia involucrata HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 39.4
Glyma.17G016800 Glycine max HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 39.4
Nitab4.5_0002031g0100 Nicotiana tabacum HOM05D000520 ORTHO05D000399 5.7e-06 55.8 65 41.5
Peaxi162Scf00196g01022 Petunia axillaris HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 39.4
QL06p004190 Quercus lobata HOM05D000520 ORTHO05D000399 5.7e-06 55.8 66 42.4
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 5.7e-06 55.8 63 42.9
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 37.9
arahy.Tifrunner.gnm1.ann1.KQD4NT Arachis hypogaea HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
AUR62038214 Chenopodium quinoa HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
Nitab4.5_0000267g0020 Nicotiana tabacum HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
Nitab4.5_0001643g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 7.4e-06 55.5 63 42.9
SalBow5G3772 Salvia bowleyana HOM05D000520 ORTHO05D000399 7.4e-06 55.5 66 39.4
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 7.4e-06 55.5 68 36.8
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Cfa015585 Carpinus fangiana HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 37.9
Ca_00641_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Lj4g0000467 Lotus japonicus HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Lalb_Chr13g0304121 Lupinus albus HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 37.9
MBI17_g34453_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Nitab4.5_0002702g0020 Nicotiana tabacum HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 9.7e-06 55.1 66 39.4
Prupe.7G246000 Prunus persica HOM05D019654 ORTHO05D010368 9.7e-06 55.1 68 38.2
Sc19g0004510 Simmondsia chinensis HOM05D000520 ORTHO05D000399 9.7e-06 55.1 70 38.6
THA.LOC104818680 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 9.7e-06 55.1 66 37.9


User provided reference genes

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