Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 4.5e-165 584.7 335 100.0
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 2.9e-156 555.4 322 97.8
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 5.3e-150 534.6 324 95.4
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 7.1e-147 524.2 324 94.1
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 7.1e-147 524.2 324 94.1
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 3.1e-142 508.8 338 81.4
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.6e-130 468.8 348 72.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 3.9e-129 465.3 342 77.2
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.8e-126 456.4 329 75.4
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.0e-124 450.7 347 72.0
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.8e-124 448.7 348 70.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.8e-124 448.7 328 74.7
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 6.5e-124 448.0 341 75.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.2e-123 445.7 352 71.6
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 4.2e-123 445.3 324 75.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.4e-121 440.3 329 70.5
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 8.5e-116 421.0 329 74.2
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 9.5e-99 364.4 351 62.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 2.1e-98 363.2 348 59.5
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 5.2e-97 358.6 353 60.3
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 4.4e-96 355.5 339 59.3
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.7e-95 353.6 343 62.1
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.7e-95 353.6 343 61.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.4e-94 350.5 364 57.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 5.4e-94 348.6 340 61.5
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 7.8e-93 344.7 348 58.3
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.9e-91 340.1 364 56.9
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.3e-91 339.3 359 57.7
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 5.6e-91 338.6 340 57.9
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 7.3e-91 338.2 351 57.5
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.1e-90 336.7 344 58.1
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.1e-90 336.7 353 62.9
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.8e-90 336.3 352 55.4
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.8e-90 336.3 365 55.1
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.8e-90 336.3 344 58.1
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.7e-90 335.5 344 58.1
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 8.0e-90 334.7 349 57.9
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.0e-89 334.3 344 59.6
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.0e-89 332.4 341 58.1
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.0e-89 332.4 353 56.9
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.8e-89 331.6 356 62.6
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 8.9e-89 331.3 365 55.6
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 4.4e-88 328.9 349 56.7
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 4.4e-88 328.9 358 55.6
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.4e-88 328.9 349 57.0
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.7e-88 328.6 349 55.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 7.5e-88 328.2 361 56.8
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 9.8e-88 327.8 356 55.6
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 4.9e-87 325.5 355 56.1
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 4.9e-87 325.5 356 62.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.4e-87 325.1 349 55.3
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.1e-86 324.3 348 58.9
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.8e-86 323.6 363 54.8
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.8e-86 323.6 355 54.9
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-86 323.6 358 58.1
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 7.0e-86 321.6 347 57.9
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.2e-85 320.9 354 58.2
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-85 320.5 364 55.5
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.6e-85 320.5 355 55.5
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 2.0e-85 320.1 354 55.9
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.5e-85 319.3 355 56.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.6e-85 318.9 339 58.1
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 5.9e-85 318.5 364 54.9
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 5.9e-85 318.5 358 54.7
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 7.8e-85 318.2 361 57.1
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.0e-84 317.8 355 56.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.3e-84 317.4 359 55.7
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 1.7e-84 317.0 357 62.5
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 3.0e-84 316.2 365 60.3
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 3.0e-84 316.2 371 53.9
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.1e-83 314.3 354 63.3
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.1e-83 314.3 347 55.6
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.5e-83 313.9 360 54.2
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.9e-83 313.5 353 56.7
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.9e-83 313.5 339 59.6
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 3.3e-83 312.8 358 58.9
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 4.3e-83 312.4 350 62.6
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 4.3e-83 312.4 356 53.7
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.3e-83 312.4 366 56.0
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 7.3e-83 311.6 350 54.6
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 9.5e-83 311.2 354 62.1
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.2e-82 310.8 357 59.4
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.6e-82 309.3 357 56.6
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 6.2e-82 308.5 359 55.4
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.1e-81 307.8 356 57.6
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.4e-81 307.4 358 52.2
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 2.3e-81 306.6 355 59.4
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 3.1e-81 306.2 347 57.1
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 3.1e-81 306.2 342 57.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 6.8e-81 305.1 365 52.3
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.2e-80 304.3 363 60.6
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.2e-80 304.3 355 54.4
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.2e-80 304.3 355 53.0
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.5e-80 303.9 355 55.2
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 4.4e-80 302.4 367 52.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 5.8e-80 302.0 365 54.0
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 7.5e-80 301.6 358 53.4
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.7e-79 299.3 339 53.4
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 6.4e-79 298.5 362 54.7
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 8.3e-79 298.1 364 59.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.9e-78 297.0 350 54.9
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.6e-77 293.9 357 59.7
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.6e-77 293.9 350 54.6
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.7e-76 290.4 353 51.3
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.3e-76 290.0 356 58.4
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.3e-76 290.0 351 58.1
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.9e-76 289.3 363 53.4
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 5.0e-76 288.9 334 53.6
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 8.6e-76 288.1 358 57.5
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.3e-75 285.8 349 51.0
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 7.3e-75 285.0 424 44.6
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.4e-73 280.8 348 60.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 7.5e-72 275.0 360 48.3
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 9.9e-72 274.6 370 52.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 3.5e-69 266.2 348 52.0
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 6.0e-69 265.4 365 47.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.5e-67 260.8 438 48.6
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 5.2e-65 252.3 373 50.9
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.4e-62 243.4 385 46.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.3e-60 236.9 307 56.0
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.0e-60 236.5 278 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 4.7e-58 229.2 375 44.3
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 6.9e-57 225.3 244 56.6
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 9.0e-57 224.9 387 48.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.8e-55 219.5 161 68.9
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 6.2e-50 202.2 290 45.9
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.4e-49 200.3 457 38.1
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 7.6e-48 195.3 284 48.2
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 9.9e-48 194.9 98 90.8
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.3e-47 194.5 325 42.8
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.7e-47 194.1 151 64.2
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.2e-47 193.7 301 48.8
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 2.9e-47 193.4 207 58.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.4e-46 191.0 134 70.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-46 189.5 99 89.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-46 189.5 99 89.9
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.5e-40 169.5 93 87.1
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 5.5e-38 162.5 291 45.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.1e-30 138.3 295 40.3
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 5.1e-28 129.4 132 53.8
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.3e-26 122.5 281 38.4
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.3e-26 122.5 281 38.4
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.4e-25 120.6 70 77.1
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.4e-24 116.7 147 53.1
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 7.6e-24 115.5 89 65.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.0e-23 115.2 94 56.4
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.9e-23 113.6 248 41.1
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.6e-21 107.8 65 78.5
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.0e-20 105.1 86 51.2
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.5e-19 101.3 67 76.1
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.1e-17 93.6 330 30.0
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.4e-16 90.1 191 42.9
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 5.5e-14 82.8 64 67.2
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.6e-13 81.3 160 43.8
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 7.9e-13 79.0 78 55.1
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.5e-06 57.4 74 45.9


User provided reference genes

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