Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p35170 Brassica napus HOM05D003550 ORTHO05D004336 2.0e-79 298.9 140 100.0
BraA09t39045Z Brassica rapa HOM05D003550 ORTHO05D004336 6.8e-67 257.3 118 98.3
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 7.3e-53 210.7 139 69.8
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 9.5e-53 210.3 139 69.8
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 1.6e-52 209.5 139 69.8
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 2.8e-52 208.8 139 70.5
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.8e-52 208.8 139 70.5
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 3.6e-52 208.4 139 69.8
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 4.7e-52 208.0 139 70.5
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 6.2e-52 207.6 139 70.5
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 6.2e-52 207.6 139 70.5
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 1.4e-51 206.5 139 69.8
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 1.4e-51 206.5 139 69.8
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 6.8e-51 204.1 139 69.1
BcaB01g02474 Brassica carinata HOM05D003550 ORTHO05D004336 1.3e-49 199.9 139 68.3
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 8.4e-49 197.2 139 64.0
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 2.7e-47 192.2 139 63.3
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 7.8e-47 190.7 139 61.9
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.0e-46 190.3 139 62.6
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.7e-46 189.5 139 60.4
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 1.7e-46 189.5 139 62.6
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 2.3e-46 189.1 139 63.3
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 3.0e-46 188.7 139 61.2
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 3.0e-46 188.7 139 60.4
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 5.1e-46 188.0 139 61.9
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 5.1e-46 188.0 139 61.9
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 5.1e-46 188.0 139 61.9
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 5.1e-46 188.0 139 62.6
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 8.6e-46 187.2 139 61.9
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 8.6e-46 187.2 139 61.2
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 1.1e-45 186.8 139 61.2
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 1.1e-45 186.8 139 60.4
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 1.1e-45 186.8 139 61.2
Lj9C657T7 Lonicera japonica HOM05D003550 ORTHO05D004336 1.5e-45 186.4 139 61.2
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 1.5e-45 186.4 139 61.2
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 2.5e-45 185.7 139 60.4
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 3.3e-45 185.3 139 59.7
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 3.3e-45 185.3 139 61.2
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 3.3e-45 185.3 139 60.4
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 4.3e-45 184.9 139 60.4
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 4.3e-45 184.9 139 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 5.6e-45 184.5 139 59.0
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 5.6e-45 184.5 139 60.4
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 5.6e-45 184.5 139 59.7
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 7.3e-45 184.1 139 59.7
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 59.7
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 60.4
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 60.4
COL.COLO4_20694 Corchorus olitorius HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 59.0
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 59.0
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 59.7
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 60.4
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 9.6e-45 183.7 139 60.4
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.2e-44 183.3 139 57.6
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.2e-44 183.3 139 57.6
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.2e-44 183.3 139 57.6
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 1.2e-44 183.3 139 61.2
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 1.6e-44 183.0 139 59.7
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 1.6e-44 183.0 139 59.0
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 1.6e-44 183.0 139 59.7
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.1e-44 182.6 139 59.0
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 2.1e-44 182.6 139 60.4
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 2.1e-44 182.6 139 59.0
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 2.1e-44 182.6 139 59.0
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 2.8e-44 182.2 139 59.0
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 2.8e-44 182.2 139 59.7
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 3.6e-44 181.8 139 59.0
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 3.6e-44 181.8 155 55.5
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.7
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 58.3
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 4.7e-44 181.4 139 59.0
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 6.2e-44 181.0 139 59.0
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 6.2e-44 181.0 139 59.0
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 6.2e-44 181.0 139 59.0
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 1.4e-43 179.9 139 58.3
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 1.4e-43 179.9 139 57.6
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 1.8e-43 179.5 139 58.3
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 2.4e-43 179.1 139 57.6
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 2.4e-43 179.1 139 57.6
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 3.1e-43 178.7 139 57.6
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 3.1e-43 178.7 139 57.6
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 4.0e-43 178.3 139 57.6
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 4.0e-43 178.3 139 59.7
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 8.9e-43 177.2 139 57.6
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 2.6e-42 175.6 139 57.6
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 3.4e-42 175.3 131 59.5
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 5.8e-42 174.5 139 59.0
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 9.9e-42 173.7 139 55.4
BolC2t06568H Brassica oleracea HOM05D003550 ORTHO05D004336 1.3e-41 173.3 132 63.6
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 2.2e-41 172.6 139 56.1
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.2e-41 172.6 139 58.3
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 6.4e-41 171.0 139 55.4
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 8.4e-41 170.6 139 55.4
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 8.4e-41 170.6 139 56.8
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 8.4e-41 170.6 139 54.7
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.1e-40 170.2 139 54.0
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.1e-40 170.2 139 55.4
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 1.1e-40 170.2 139 56.1
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.9e-40 169.5 139 56.8
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.4e-40 169.1 139 56.1
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 2.4e-40 169.1 139 54.7
Sabra16G0169400 Salix brachista HOM05D003550 ORTHO05D004336 2.4e-40 169.1 139 54.7
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 5.4e-40 167.9 139 54.0
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 7.1e-40 167.5 139 56.1
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 7.1e-40 167.5 139 53.2
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 1.6e-39 166.4 139 56.1
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 2.1e-39 166.0 139 54.7
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 2.1e-39 166.0 139 53.2
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 2.7e-39 165.6 139 51.1
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 3.5e-39 165.2 139 53.2
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 3.5e-39 165.2 139 56.8
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 4.6e-39 164.9 139 54.0
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 6.0e-39 164.5 139 52.5
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 3.0e-38 162.2 169 47.9
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 3.0e-38 162.2 139 51.8
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 3.0e-38 162.2 139 53.2
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 3.0e-38 162.2 140 52.1
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 6.6e-38 161.0 140 51.4
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 6.6e-38 161.0 139 48.9
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 1.5e-37 159.8 135 55.6
SHI04010 Sapria himalayana HOM05D003550 ORTHO05D004336 4.3e-37 158.3 133 55.6
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 3.6e-36 155.2 139 49.6
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 8.1e-36 154.1 139 49.6
Glyma.15G233600 Glycine max HOM05D003550 ORTHO05D004336 2.0e-34 149.4 139 51.8
BolC4t25700H Brassica oleracea HOM05D003550 ORTHO05D032327 1.2e-15 87.0 139 41.0
C04p41180 Brassica napus HOM05D003550 ORTHO05D032327 1.6e-15 86.7 137 40.9
HanXRQChr15g0481011 Helianthus annuus HOM05D003550 ORTHO05D004336 7.9e-15 84.3 154 28.6
SMO271G0120 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 1.0e-14 84.0 122 32.8
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 3.7e-12 75.5 103 32.0
CBR_g22349 Chara braunii HOM05D003550 ORTHO05D004336 4.8e-12 75.1 117 32.5
CBR_g22351 Chara braunii HOM05D003550 ORTHO05D004039 2.9e-09 65.9 136 28.7
Glyma.15G233567 Glycine max HOM05D003550 ORTHO05D004336 1.9e-08 63.2 110 28.2
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 2.5e-08 62.8 76 46.1
BcaB01g03097 Brassica carinata HOM05D003550 ORTHO05D004336 6.1e-07 58.2 38 68.4
CBR_g21745 Chara braunii HOM05D003550 ORTHO05D004336 6.1e-07 58.2 133 24.8
Os05g0392000 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 1.8e-06 56.6 89 28.1
CBR_g26207 Chara braunii HOM05D003550 ORTHO05D004336 3.9e-06 55.5 117 23.9


User provided reference genes

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