Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 6.8e-34 146.7 73 100.0
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 6.8e-34 146.7 73 100.0
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.0e-33 145.2 73 98.6
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.0e-33 145.2 73 98.6
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.7e-32 142.1 73 95.9
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 1.7e-32 142.1 73 97.3
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 8.3e-32 139.8 73 94.5
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 5.9e-30 133.7 73 91.8
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 7.7e-30 133.3 73 90.4
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 6.5e-29 130.2 73 91.8
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.9e-28 128.6 73 90.4
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 7.2e-28 126.7 73 89.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 7.2e-28 126.7 73 89.0
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.6e-27 125.6 73 89.0
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 8.0e-27 123.2 74 85.1
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.0e-25 118.6 73 83.6
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 4.1e-23 110.9 73 76.7
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.5e-20 102.4 73 68.5
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 9.5e-20 99.8 73 69.9
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.1e-19 98.6 73 67.1
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 2.1e-19 98.6 73 65.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 8.0e-19 96.7 72 66.7
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 1.4e-18 95.9 76 63.2
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.8e-18 95.5 73 65.8
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 2.3e-18 95.1 73 64.4
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 4.0e-18 94.4 67 67.2
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 5.2e-18 94.0 74 67.6
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 1.2e-17 92.8 76 60.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-17 92.8 73 65.8
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.5e-17 92.4 71 64.8
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.5e-17 92.4 73 64.4
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 2.0e-17 92.0 77 63.6
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 2.0e-17 92.0 76 67.1
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.6e-17 91.7 74 66.2
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 4.4e-17 90.9 73 64.4
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 4.4e-17 90.9 74 66.2
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.7e-17 90.5 73 60.3
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 9.8e-17 89.7 73 61.6
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.3e-16 89.4 74 62.2
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.7e-16 89.0 71 62.0
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 2.8e-16 88.2 76 63.2
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 4.9e-16 87.4 69 63.8
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 4.9e-16 87.4 49 81.6
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 8.3e-16 86.7 73 65.8
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.4e-15 85.9 75 61.3
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.4e-15 85.9 76 61.8
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 1.8e-15 85.5 73 64.4
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.4e-15 85.1 66 63.6
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.2e-15 84.7 66 62.1
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.2e-15 84.7 73 63.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.1e-15 84.3 81 56.8
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 4.1e-15 84.3 73 60.3
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 5.4e-15 84.0 65 66.2
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 7.0e-15 83.6 66 62.1
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 7.0e-15 83.6 73 58.9
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 9.2e-15 83.2 64 65.6
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 9.2e-15 83.2 71 56.3
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 1.2e-14 82.8 73 58.9
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.2e-14 82.8 79 58.2
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 5.9e-14 80.5 66 62.1
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 7.8e-14 80.1 64 59.4
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.8e-14 80.1 72 55.6
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 7.8e-14 80.1 72 55.6
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 7.8e-14 80.1 72 55.6
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 7.8e-14 80.1 70 57.1
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 1.0e-13 79.7 69 60.9
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 1.3e-13 79.3 73 53.4
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.3e-13 78.6 57 63.2
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 3.9e-13 77.8 46 73.9
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 3.9e-13 77.8 73 54.8
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.1e-12 76.3 64 62.5
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 4.3e-12 74.3 51 74.5
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.1e-11 72.0 66 51.5
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.1e-11 72.0 75 56.0
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 2.8e-11 71.6 53 58.5
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 3.6e-11 71.2 69 56.5
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 1.0e-10 69.7 64 57.8
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.4e-10 69.3 49 65.3
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 6.8e-10 67.0 64 56.2
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 3.4e-09 64.7 40 65.0
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.9e-07 58.9 50 62.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 3.2e-07 58.2 50 60.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 4.1e-07 57.8 61 49.2
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 5.4e-07 57.4 50 60.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 7.0e-07 57.0 48 54.2
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 1.6e-06 55.8 57 49.1
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 1.6e-06 55.8 54 53.7
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 1.6e-06 55.8 50 60.0


User provided reference genes

Program Settings