Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 8.0e-44 179.9 81 100.0
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 8.0e-44 179.9 81 100.0
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.5e-10 69.3 37 81.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.5e-10 69.3 37 81.1
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.0e-10 68.9 37 81.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.0e-10 68.9 37 81.1
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.6e-10 68.6 38 78.9
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.8e-10 67.4 37 78.4
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.8e-10 67.4 37 78.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.8e-10 67.4 37 78.4
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 5.8e-10 67.4 37 78.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 7.5e-10 67.0 37 78.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 7.5e-10 67.0 37 78.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 7.5e-10 67.0 37 78.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 2.9e-09 65.1 37 75.7
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.9e-09 65.1 37 75.7
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.9e-09 65.1 37 75.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 8.3e-09 63.5 37 73.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-08 63.2 37 73.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.9e-08 62.4 38 71.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.4e-08 62.0 38 68.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 3.2e-08 61.6 37 73.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.1e-08 61.2 38 71.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 5.4e-08 60.8 38 68.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 5.4e-08 60.8 38 68.4
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 5.4e-08 60.8 38 73.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 7.1e-08 60.5 38 68.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.1e-08 60.5 38 68.4
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 9.2e-08 60.1 38 71.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.2e-07 59.7 38 68.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-07 59.7 66 48.5
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.6e-07 59.3 38 65.8
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.6e-07 59.3 38 65.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.1e-07 58.9 38 68.4
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-07 58.5 38 68.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-07 58.5 38 68.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.7e-07 58.5 38 63.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.5e-07 58.2 38 68.4
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.6e-07 57.8 38 63.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.6e-07 57.8 38 65.8
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.6e-07 57.8 37 67.6
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.6e-07 57.8 38 65.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 4.6e-07 57.8 37 67.6
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.6e-07 57.8 38 63.2
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 4.6e-07 57.8 37 67.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 64.9
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 67.6
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 67.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 67.6
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 64.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 6.0e-07 57.4 37 67.6
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 7.8e-07 57.0 38 68.4
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 7.8e-07 57.0 38 65.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.0e-06 56.6 40 65.0
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.0e-06 56.6 35 68.6
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-06 56.2 38 65.8
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.3e-06 56.2 38 63.2
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.3e-06 56.2 37 64.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.3e-06 56.2 37 64.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.7e-06 55.8 42 57.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.3e-06 55.5 38 63.2
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.3e-06 55.5 31 77.4
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.3e-06 55.5 33 72.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.3e-06 55.5 38 68.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.3e-06 55.5 38 63.2
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.0e-06 55.1 38 65.8
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 3.0e-06 55.1 37 67.6
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.0e-06 55.1 38 63.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.0e-06 55.1 37 62.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.0e-06 55.1 38 65.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 3.0e-06 55.1 38 63.2
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 3.9e-06 54.7 38 60.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 5.1e-06 54.3 35 68.6
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 5.1e-06 54.3 35 68.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.1e-06 54.3 37 64.9
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.1e-06 54.3 37 62.2
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.1e-06 54.3 37 62.2
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 5.1e-06 54.3 37 62.2
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 5.1e-06 54.3 38 63.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 6.6e-06 53.9 35 68.6
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 6.6e-06 53.9 38 63.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 8.6e-06 53.5 38 63.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.6e-06 53.5 38 60.5
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.6e-06 53.5 37 62.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 8.6e-06 53.5 38 63.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 8.6e-06 53.5 37 59.5


User provided reference genes

Program Settings