Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.5e-153 545.4 283 100.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.5e-153 545.4 283 100.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 6.0e-139 497.7 289 91.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 6.0e-139 497.7 289 91.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 4.3e-137 491.5 283 91.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.8e-135 486.1 283 86.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.5e-134 483.0 282 87.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.0e-134 482.6 283 87.6
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.0e-134 482.6 283 87.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.6e-131 473.0 283 86.9
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.6e-131 473.0 283 86.9
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.6e-131 473.0 283 86.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.6e-131 471.9 283 84.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.8e-130 469.5 283 85.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 3.9e-130 468.4 283 84.5
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.3e-129 464.9 286 86.0
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 7.4e-129 464.2 284 85.6
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.1e-121 440.3 282 80.5
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-114 416.8 284 79.6
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.1e-103 380.6 283 69.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 8.5e-101 370.9 280 69.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.1e-100 370.5 280 68.6
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.5e-100 369.4 282 68.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.5e-100 369.4 282 68.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.5e-100 369.4 265 72.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 5.5e-100 368.2 237 76.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 5.5e-100 368.2 285 66.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-99 366.7 280 68.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.6e-99 366.7 230 79.6
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.6e-99 365.5 284 65.5
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.6e-99 365.5 285 68.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 4.7e-99 365.2 281 68.0
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 6.1e-99 364.8 284 67.6
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 8.0e-99 364.4 250 72.0
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 8.0e-99 364.4 250 74.4
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 8.0e-99 364.4 284 67.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-98 364.0 251 72.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.0e-98 362.1 273 69.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 8.8e-98 360.9 251 74.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.2e-97 360.5 251 73.7
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.2e-97 360.5 252 73.0
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.6e-97 359.4 283 66.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 4.4e-97 358.6 284 66.9
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.4e-97 358.6 256 70.3
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.7e-97 358.2 249 72.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 7.5e-97 357.8 284 68.3
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 7.5e-97 357.8 202 88.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.5e-97 357.8 251 72.9
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-96 356.7 264 68.6
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.7e-96 356.7 273 68.9
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.2e-96 356.3 229 77.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.8e-96 355.9 280 66.8
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.7e-96 355.5 256 71.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.7e-96 355.5 280 67.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.7e-96 355.5 273 68.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 4.8e-96 355.1 284 66.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.3e-96 354.8 256 72.3
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.3e-96 354.8 264 68.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.3e-96 354.8 264 68.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.3e-96 354.8 233 76.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 8.3e-96 354.4 259 69.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 8.3e-96 354.4 251 72.1
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.1e-95 354.0 229 76.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.4e-95 353.6 247 72.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.4e-95 353.6 255 70.2
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.8e-95 353.2 284 64.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.4e-95 352.8 285 63.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 5.4e-95 351.7 257 71.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.4e-95 351.7 283 67.1
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.1e-95 350.9 236 74.6
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.2e-94 350.5 288 63.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-94 350.5 233 73.4
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.0e-94 349.7 257 71.2
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.7e-94 349.4 260 68.8
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-94 349.4 255 68.6
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.7e-94 349.4 285 66.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.5e-94 348.6 229 76.0
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 4.5e-94 348.6 282 67.4
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 5.9e-94 348.2 288 63.5
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.9e-94 348.2 251 71.7
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 7.7e-94 347.8 230 75.2
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.9e-93 345.9 275 64.7
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.8e-93 345.5 232 74.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.5e-92 343.6 286 62.2
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.3e-92 342.4 237 71.7
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.5e-92 341.7 236 72.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 7.2e-92 341.3 228 73.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.2e-91 340.5 229 73.8
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.2e-91 340.5 228 73.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.6e-91 340.1 267 68.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.8e-91 339.3 263 65.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.7e-91 338.6 263 65.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 6.1e-91 338.2 236 75.4
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.8e-90 336.7 221 76.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.2e-89 334.0 230 72.6
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.0e-89 333.2 251 68.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.6e-89 332.8 245 68.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.7e-88 330.1 258 67.1
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.8e-88 329.3 250 70.0
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 6.3e-88 328.2 273 60.8
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-87 326.6 280 64.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 5.4e-87 325.1 245 66.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.4e-87 325.1 243 67.1
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 9.2e-87 324.3 290 62.1
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.0e-86 323.2 245 66.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.7e-86 322.8 232 70.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.8e-86 321.2 284 61.3
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.5e-84 314.3 266 62.0
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.7e-83 312.0 252 62.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 6.8e-82 308.1 229 69.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 3.4e-81 305.8 199 75.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 5.8e-81 305.1 281 56.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 9.8e-81 304.3 282 59.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 3.7e-80 302.4 199 76.4
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.1e-79 300.8 230 67.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.7e-78 296.2 215 69.8
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.7e-78 296.2 278 59.7
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 5.0e-77 292.0 199 71.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.5e-76 289.7 199 73.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 9.5e-76 287.7 199 72.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-74 284.3 191 74.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.2e-74 282.0 239 62.3
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 8.9e-74 281.2 200 71.0
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.4e-73 278.9 199 70.9
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.2e-72 276.6 238 60.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.9e-72 275.4 228 63.6
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.5e-70 269.2 199 68.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.6e-70 268.9 235 61.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 7.8e-70 268.1 186 71.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.7e-69 266.9 225 61.8
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.3e-64 250.8 167 76.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.9e-61 239.2 185 68.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.9e-61 239.2 227 56.4
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.5e-60 237.3 240 53.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-57 227.3 284 47.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.8e-56 222.6 191 60.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-50 203.8 146 67.8
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 3.2e-47 193.0 146 67.8
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.3e-47 191.4 127 73.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.5e-44 184.1 211 50.2
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.0e-42 174.9 131 67.9
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-40 170.6 131 67.9
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.0e-37 161.4 131 64.1
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.9e-36 157.1 158 56.3
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-35 154.1 102 73.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-35 154.1 102 73.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.4e-32 142.1 115 67.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 4.2e-31 139.4 123 58.5
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-28 130.6 74 86.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 3.3e-28 129.8 157 47.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.4e-28 128.6 74 85.1
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 9.6e-28 128.3 74 85.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.3e-27 127.9 74 85.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.8e-27 125.9 74 82.4
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.5e-23 112.5 201 35.8
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.4e-20 102.1 70 70.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-18 98.2 64 73.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 9.0e-18 95.1 135 45.2
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-16 90.1 63 71.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.8e-16 89.7 66 69.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.4e-15 87.8 64 68.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.7e-13 79.0 64 64.1
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.5e-12 77.0 44 84.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 9.7e-12 75.1 46 80.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.8e-11 73.6 44 77.3
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.5e-09 67.8 37 78.4
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.5e-09 67.8 37 78.4
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.0e-09 67.4 64 54.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.0e-08 65.1 61 55.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.5e-08 62.0 215 27.4
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 7.2e-07 58.9 48 60.4
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 7.9e-06 55.5 33 75.8


User provided reference genes

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