Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 3.3e-287 991.1 530 100.0
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.0e-261 904.4 487 99.2
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.2e-257 892.9 487 98.2
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.0e-256 889.8 487 97.9
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 8.1e-254 880.2 480 98.1
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 2.8e-238 828.6 487 91.4
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 8.1e-238 827.0 487 92.8
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 8.4e-235 817.0 487 91.0
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.9e-234 815.8 487 90.8
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 3.9e-232 808.1 487 88.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.9e-232 808.1 487 88.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.9e-232 808.1 487 88.9
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 5.1e-232 807.7 487 89.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 6.7e-232 807.4 487 89.1
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 6.7e-232 807.4 488 89.8
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.1e-229 800.0 488 89.8
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.4e-226 789.6 488 88.9
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.1e-225 785.8 475 88.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.4e-213 746.5 489 83.0
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 8.5e-211 737.3 493 81.3
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 8.3e-190 667.5 433 81.1
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.1e-189 665.6 433 79.9
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 9.1e-189 664.1 480 74.0
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.2e-188 663.7 430 81.2
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.2e-188 663.7 430 81.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 2.0e-188 662.9 491 73.7
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 3.5e-188 662.1 427 82.2
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 7.7e-188 661.0 434 80.6
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.0e-187 660.6 433 79.4
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.8e-187 658.7 416 84.1
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.1e-186 657.1 477 73.8
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.1e-186 657.1 430 80.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.2e-186 655.6 477 73.6
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-185 653.3 477 73.6
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 1.6e-185 653.3 433 80.6
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.6e-185 653.3 426 79.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.6e-185 652.1 430 80.5
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.6e-185 652.1 407 82.6
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 6.1e-185 651.4 469 73.8
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.0e-184 650.6 426 79.8
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.4e-184 650.2 428 80.8
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.3e-184 649.4 429 80.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 6.8e-184 647.9 429 79.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.2e-182 642.9 425 78.8
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 2.8e-182 642.5 427 78.9
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 4.1e-181 638.6 430 78.8
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 5.4e-181 638.3 445 76.4
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.6e-180 636.7 487 71.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 2.0e-180 636.3 416 80.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.7e-180 636.0 487 70.2
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.5e-180 635.6 417 80.3
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-179 634.0 429 78.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-179 633.6 441 76.9
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.7e-179 633.3 434 76.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 3.8e-179 632.1 406 80.5
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 5.0e-179 631.7 429 77.4
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 8.6e-179 630.9 506 69.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 8.6e-179 630.9 406 80.8
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 8.6e-179 630.9 487 72.5
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-178 630.6 478 72.2
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.1e-178 630.6 491 70.7
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.5e-178 630.2 481 71.5
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.9e-178 629.8 440 75.9
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-178 629.0 478 72.0
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.3e-178 629.0 446 75.3
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 3.3e-178 629.0 433 76.9
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 5.6e-178 628.2 493 70.8
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 5.6e-178 628.2 385 83.9
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 7.3e-178 627.9 478 71.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.2e-177 627.1 487 69.8
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.6e-177 625.5 460 74.1
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 6.1e-177 624.8 432 77.1
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 6.1e-177 624.8 417 77.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-176 624.0 491 70.7
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.4e-176 623.6 448 74.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.3e-176 622.9 408 78.7
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.0e-176 622.1 436 76.6
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.5e-175 620.2 436 73.9
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 5.7e-175 618.2 405 78.5
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.9e-174 615.9 416 76.7
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.9e-174 615.9 452 73.9
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 4.9e-174 615.1 440 73.6
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 6.4e-174 614.8 497 67.8
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 6.4e-174 614.8 407 77.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 8.3e-174 614.4 451 74.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 5.4e-173 611.7 434 75.8
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.0e-172 609.8 475 69.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 5.9e-172 608.2 495 69.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.1e-170 604.0 378 82.3
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.9e-170 603.2 437 74.4
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.9e-170 603.2 428 74.3
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 4.3e-170 602.1 433 73.9
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.6e-169 600.1 440 71.8
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.7e-169 598.6 376 82.2
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 4.7e-169 598.6 430 73.7
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.0e-168 597.4 411 76.6
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.1e-168 595.9 430 74.0
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.2e-167 594.0 436 72.7
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 4.9e-166 588.6 429 72.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 8.3e-166 587.8 388 77.1
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 5.4e-165 585.1 438 70.3
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.6e-164 583.6 431 71.5
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 3.9e-163 578.9 395 76.5
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 8.6e-163 577.8 443 70.9
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 2.1e-161 573.2 434 71.2
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.1e-161 573.2 407 73.7
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 5.4e-157 558.5 497 64.2
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.0e-155 552.7 429 69.0
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 2.1e-153 546.6 441 69.6
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.3e-152 543.1 388 69.8
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.8e-150 535.8 405 71.4
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.9e-147 525.8 443 65.5
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.5e-146 523.9 394 73.6
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 7.1e-141 505.0 417 66.2
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 7.1e-141 505.0 417 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.8e-131 473.8 395 61.8
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.1e-128 463.0 453 57.2
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 6.4e-126 455.3 311 74.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.8e-123 447.2 414 58.5
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.8e-118 429.5 348 69.8
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.8e-118 429.5 365 61.6
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 5.5e-117 425.6 316 69.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 4.7e-92 342.8 202 90.6
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 4.5e-87 326.2 238 70.2
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 5.9e-87 325.9 441 46.3
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 7.7e-87 325.5 387 46.8
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-80 304.7 305 58.4
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 5.5e-69 266.2 387 40.8
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.8e-67 261.2 229 69.4
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 8.3e-65 252.3 368 37.8
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.8e-64 251.1 200 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.6e-58 230.7 375 37.3
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.7e-54 218.0 128 91.4
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.3e-54 217.6 436 32.6
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 4.7e-52 209.9 264 48.1
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.5e-50 204.9 426 36.9
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.2e-42 178.7 135 70.4
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 9.2e-40 169.1 141 67.4
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.2e-39 168.7 126 65.9
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 8.7e-30 136.0 86 79.1
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.6e-28 130.6 112 60.7
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.0e-26 124.8 125 55.2
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.6e-20 105.1 93 65.6
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.6e-20 104.0 93 61.3
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 3.5e-15 87.4 348 24.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.2e-10 72.4 214 29.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 4.9e-09 67.0 394 24.6
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 6.4e-09 66.6 67 58.2


User provided reference genes

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