Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.4e-93 346.3 180 100.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.4e-93 346.3 180 100.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.7e-92 342.0 179 98.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-91 339.3 179 98.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.0e-91 338.6 179 98.3
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 5.1e-83 311.2 171 91.2
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.7e-83 310.8 179 88.3
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.0e-80 301.6 169 90.5
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.4e-77 293.1 169 88.2
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.7e-75 284.3 187 78.6
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.5e-74 282.3 179 76.5
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 8.2e-73 277.3 179 75.4
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.4e-72 276.6 179 74.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-72 276.2 179 76.0
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.8e-72 276.2 179 75.4
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.0e-72 273.9 165 81.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-71 273.1 179 73.7
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-71 273.1 179 74.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.5e-71 273.1 179 74.3
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.6e-71 272.3 179 74.3
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.6e-71 272.3 179 74.3
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 4.5e-71 271.6 179 74.9
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.0e-70 270.4 180 75.0
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.1e-66 256.9 206 65.0
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.9e-66 256.1 208 64.4
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.9e-66 256.1 176 71.6
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 4.3e-66 255.0 172 74.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 9.7e-66 253.8 179 70.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 9.7e-66 253.8 179 69.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-65 253.4 168 73.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.2e-65 252.7 179 72.1
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.8e-65 252.3 166 75.3
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 3.7e-65 251.9 179 69.8
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 4.8e-65 251.5 179 69.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 6.3e-65 251.1 180 70.6
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 6.3e-65 251.1 169 73.4
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.1e-64 250.4 180 69.4
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.1e-64 250.4 179 69.8
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.1e-64 250.4 179 68.2
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.4e-64 250.0 179 70.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.4e-64 250.0 169 73.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 4.1e-64 248.4 169 72.8
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.9e-64 247.7 169 72.8
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 6.9e-64 247.7 179 69.3
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 9.1e-64 247.3 177 68.9
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.6e-63 245.7 175 68.0
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.4e-63 245.4 160 75.0
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 3.4e-63 245.4 170 74.1
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.7e-62 243.0 170 73.5
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 2.2e-62 242.7 177 68.4
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.9e-62 242.3 180 67.8
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.9e-62 242.3 177 67.8
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.8e-62 241.9 164 73.8
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.0e-62 241.5 130 93.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.0e-62 241.5 162 72.8
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 5.0e-62 241.5 169 71.0
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 6.5e-62 241.1 179 70.9
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 8.5e-62 240.7 177 67.2
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.1e-61 240.4 162 71.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.4e-61 240.0 155 76.1
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.4e-61 240.0 155 76.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.4e-61 240.0 155 76.1
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.4e-61 240.0 161 72.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 179 65.4
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 3.2e-61 238.8 154 75.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.2e-61 238.8 169 69.2
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.2e-61 238.8 169 71.0
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.2e-61 238.4 156 74.4
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 5.5e-61 238.0 197 62.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 5.5e-61 238.0 162 71.0
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.2e-61 237.7 164 71.3
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.2e-60 236.9 160 71.2
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.1e-60 236.1 159 72.3
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 3.6e-60 235.3 179 64.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.6e-60 235.3 169 68.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.6e-60 235.3 175 66.9
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.6e-60 235.3 164 71.3
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.6e-60 235.3 164 70.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 6.1e-60 234.6 179 65.9
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.9e-60 234.2 171 69.0
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.0e-59 233.8 130 90.0
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.0e-59 233.8 158 72.2
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.4e-59 233.4 164 71.3
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.4e-59 233.4 192 63.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.4e-59 233.4 164 68.9
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.4e-59 233.4 154 74.0
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.8e-59 233.0 170 69.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 3.0e-59 232.3 175 65.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-59 231.9 159 71.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.9e-59 231.9 179 63.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 8.8e-59 230.7 171 66.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 8.8e-59 230.7 171 69.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.1e-58 230.3 130 87.7
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.6e-58 229.2 155 75.5
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.4e-58 228.4 201 59.7
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.4e-58 228.4 173 65.9
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 5.7e-58 228.0 164 69.5
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 7.4e-58 227.6 159 72.3
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 9.7e-58 227.3 159 71.1
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 9.7e-58 227.3 162 70.4
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.2e-57 226.1 173 65.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 3.7e-57 225.3 176 63.1
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 3.7e-57 225.3 165 67.9
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.8e-56 223.0 164 68.9
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.4e-56 222.6 154 70.8
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.4e-56 222.6 171 64.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.9e-56 221.1 169 60.9
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.2e-55 220.3 154 70.1
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.0e-55 219.5 172 62.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 3.4e-55 218.8 174 63.8
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-54 217.2 154 69.5
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.0e-54 217.2 170 64.1
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.0e-54 217.2 172 61.0
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-54 216.5 153 71.2
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-54 216.1 153 70.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.2e-54 216.1 153 70.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.9e-54 215.7 179 62.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.8e-54 215.3 154 71.4
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 5.0e-54 214.9 223 54.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 7.2e-53 211.1 179 58.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 9.4e-53 210.7 157 64.3
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.2e-52 210.3 155 69.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 2.1e-52 209.5 160 64.4
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 2.7e-52 209.1 153 70.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 7.9e-52 207.6 162 66.0
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.8e-51 206.5 168 58.3
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 3.0e-51 205.7 130 78.5
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.1e-50 203.8 169 58.6
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.6e-50 202.6 159 65.4
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.6e-50 202.6 151 66.2
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-49 199.9 171 60.2
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.8e-49 199.1 129 76.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.7e-49 198.7 162 63.0
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.4e-48 196.1 122 79.5
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 3.1e-48 195.7 150 63.3
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.2e-47 193.7 130 73.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 5.9e-47 191.4 130 70.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.5e-45 186.8 131 73.3
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.6e-42 176.0 118 70.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 5.7e-42 174.9 122 71.3
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.2e-41 172.9 151 54.3
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.4e-40 169.5 120 71.7
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.3e-40 168.3 144 56.2
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-39 167.2 155 54.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.5e-39 165.2 121 66.1
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 2.2e-38 162.9 172 48.8
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.2e-38 162.9 130 61.5
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 5.0e-38 161.8 130 63.1
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 6.5e-38 161.4 143 56.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 8.0e-36 154.5 148 50.0
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.4e-35 153.7 96 79.2
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 5.2e-35 151.8 151 51.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 4.1e-32 142.1 170 45.9
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.5e-29 131.7 111 57.7
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 9.8e-26 120.9 97 62.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.5e-23 112.5 112 54.5
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 3.8e-22 109.0 149 46.3
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.8e-16 90.1 128 44.5
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-12 77.4 78 47.4
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.3e-09 67.4 46 63.0
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.9e-08 63.5 44 68.2
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 7.0e-08 61.6 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 7.0e-08 61.6 46 69.6
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 3.5e-07 59.3 46 65.2
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 4.6e-07 58.9 47 66.0


User provided reference genes

Program Settings