Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 5.4e-107 391.0 192 100.0
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 5.6e-96 354.4 192 91.7
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 5.6e-96 354.4 192 91.7
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 3.6e-95 351.7 192 91.1
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 7.8e-90 334.0 168 97.0
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 2.8e-87 325.5 201 85.1
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.8e-78 296.2 200 79.5
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 8.7e-73 277.3 196 77.0
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.8e-70 269.6 197 75.1
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 2.4e-70 269.2 199 74.4
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 6.9e-70 267.7 202 71.8
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.0e-68 263.8 197 74.1
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.7e-66 255.8 193 71.0
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.6e-66 255.0 204 67.6
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 4.6e-66 255.0 209 67.5
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.2e-63 246.1 205 65.4
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 3.2e-59 232.3 175 73.7
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.1e-58 229.6 173 74.0
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 7.4e-56 221.1 207 61.4
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.3e-54 214.9 207 59.9
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.8e-41 173.3 211 47.9
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.3e-41 172.9 207 47.8
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.5e-40 170.2 210 48.1
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-40 169.9 217 46.5
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.4e-40 168.7 205 45.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.2e-39 166.4 210 46.2
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.8e-39 166.0 210 46.2
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.8e-39 166.0 210 46.7
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 4.8e-39 165.2 210 47.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-39 164.5 209 45.5
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-39 164.5 214 46.7
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.1e-38 164.1 209 44.5
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.1e-38 164.1 216 47.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.4e-38 163.7 207 46.9
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 5.3e-38 161.8 210 45.7
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 7.0e-38 161.4 216 44.4
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.1e-38 161.0 211 46.4
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.6e-37 160.2 211 47.4
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.6e-37 159.5 207 44.0
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.6e-37 159.5 210 45.7
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 3.5e-37 159.1 210 45.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.5e-37 159.1 210 46.7
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 5.9e-37 158.3 208 45.2
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 7.7e-37 157.9 211 46.9
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.3e-36 157.1 210 45.2
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.3e-36 157.1 212 43.9
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.3e-36 157.1 208 45.7
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.3e-36 157.1 208 45.7
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.7e-36 156.8 209 46.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.2e-36 156.4 212 43.4
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.2e-36 156.4 209 46.4
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.2e-36 156.4 209 46.4
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 3.8e-36 155.6 208 43.8
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.8e-36 155.6 212 42.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.0e-36 155.2 210 46.7
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 6.5e-36 154.8 209 44.0
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 8.5e-36 154.5 211 46.4
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.1e-35 154.1 209 45.9
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-35 153.7 193 47.2
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-35 153.3 210 46.7
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.9e-35 153.3 211 43.6
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.5e-35 152.9 212 42.5
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.2e-35 152.5 210 44.8
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 3.2e-35 152.5 208 44.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 5.5e-35 151.8 212 44.3
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 7.2e-35 151.4 207 43.5
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 9.4e-35 151.0 215 45.6
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 9.4e-35 151.0 210 44.3
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-34 150.6 218 44.0
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.2e-34 150.6 210 44.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.2e-34 150.6 211 45.5
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.1e-34 149.8 211 46.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.1e-34 149.8 211 46.4
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 3.6e-34 149.1 206 45.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.6e-34 149.1 211 46.4
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.7e-34 148.7 229 41.0
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 8.0e-34 147.9 187 47.1
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.4e-33 147.1 211 44.5
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.8e-33 146.7 206 43.7
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.0e-33 146.0 213 42.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.0e-33 146.0 211 41.7
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 6.7e-33 144.8 204 42.6
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.2e-32 144.1 212 41.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.5e-32 143.7 209 43.5
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.5e-32 143.7 208 42.8
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 2.0e-32 143.3 219 45.7
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.0e-32 143.3 210 43.8
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 4.4e-32 142.1 186 47.8
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 5.7e-32 141.7 207 43.0
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 7.5e-32 141.4 216 41.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 7.5e-32 141.4 212 42.5
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 9.7e-32 141.0 186 45.2
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.3e-31 140.6 183 44.3
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.3e-31 140.6 200 42.0
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 2.2e-31 139.8 185 43.2
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 6.3e-31 138.3 208 41.8
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.1e-30 137.5 207 42.5
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.8e-30 136.7 223 43.0
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.4e-30 136.3 196 41.8
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.1e-30 135.6 209 41.6
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 4.1e-30 135.6 198 43.4
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 5.3e-30 135.2 201 45.8
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 7.0e-30 134.8 208 40.9
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 9.1e-30 134.4 205 38.5
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 9.1e-30 134.4 207 40.6
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.2e-29 134.0 187 41.7
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.6e-29 133.7 208 40.9
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 2.7e-29 132.9 215 42.3
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.7e-29 132.9 184 45.7
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 3.5e-29 132.5 214 41.6
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 4.5e-29 132.1 179 41.9
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 4.5e-29 132.1 211 40.8
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.7e-28 130.2 202 43.1
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.7e-28 130.2 182 42.9
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 2.2e-28 129.8 210 41.4
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.2e-28 129.8 204 41.2
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 2.9e-28 129.4 225 40.9
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 2.9e-28 129.4 185 44.3
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 3.8e-28 129.0 220 43.6
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 3.8e-28 129.0 220 38.6
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 6.5e-28 128.3 209 36.8
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.5e-27 127.1 185 41.6
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 9.4e-27 124.4 187 41.7
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 9.4e-27 124.4 205 40.5
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.2e-26 124.0 226 39.4
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-26 124.0 186 44.6
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.1e-26 123.2 212 40.6
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.6e-26 122.5 216 39.8
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 3.6e-26 122.5 190 42.1
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 3.6e-26 122.5 187 41.7
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.6e-26 122.5 214 39.3
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.0e-25 120.9 189 42.9
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 1.4e-25 120.6 187 42.8
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.4e-25 120.6 192 43.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.3e-25 119.8 201 39.3
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 5.2e-25 118.6 184 41.8
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 6.8e-25 118.2 184 38.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.2e-24 117.5 217 40.1
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.5e-24 117.1 188 39.9
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.6e-24 116.3 227 38.8
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.6e-24 116.3 182 42.3
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 3.4e-24 115.9 219 39.3
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 3.4e-24 115.9 211 38.4
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 5.7e-24 115.2 179 40.8
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 7.5e-24 114.8 189 39.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 7.5e-24 114.8 203 39.9
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 9.8e-24 114.4 190 38.4
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.3e-23 114.0 195 41.5
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.7e-23 113.6 204 39.7
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 4.8e-23 112.1 184 38.6
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.1e-22 110.9 201 37.8
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 2.7e-21 106.3 204 37.7
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 2.3e-20 103.2 215 40.5
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.9e-20 102.8 207 35.7
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 7.2e-19 98.2 173 36.4
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 7.2e-19 98.2 234 33.8
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.0e-17 94.4 234 32.9
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.0e-17 92.8 176 35.2
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.0e-17 92.4 152 38.8
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 6.8e-17 91.7 103 50.5
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 8.9e-17 91.3 220 31.4
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 7.5e-16 88.2 226 34.1
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 7.5e-16 88.2 164 38.4
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 3.7e-15 85.9 155 41.9
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 6.3e-15 85.1 168 38.1
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.1e-14 84.3 187 35.8
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 8.9e-09 64.7 169 32.5
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 8.9e-09 64.7 171 32.2
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-08 63.5 169 32.0
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.6e-08 63.2 198 32.8
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 9.8e-08 61.2 92 42.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 9.8e-08 61.2 89 39.3
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 1.1e-06 57.8 86 39.5
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 9.2e-06 54.7 46 47.8
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 9.2e-06 54.7 146 30.8


User provided reference genes

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