Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-177 625.5 332 100.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-166 589.7 312 100.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 8.2e-103 377.9 324 69.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 6.9e-102 374.8 350 65.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.9e-101 371.7 327 67.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.4e-94 349.7 295 69.5
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.0e-93 346.7 383 59.3
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.3e-92 344.0 347 62.2
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.7e-90 335.5 352 59.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-88 330.1 331 65.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-86 323.2 352 60.2
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 4.1e-86 322.4 340 59.1
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.2e-85 320.9 330 58.5
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-85 320.5 350 60.0
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-85 320.1 349 59.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.3e-84 317.4 348 58.9
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 5.2e-81 305.4 381 54.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.5e-68 261.9 301 53.8
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.3e-63 247.7 303 52.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-62 242.7 230 67.0
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 4.1e-62 242.7 230 67.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 5.4e-62 242.3 329 46.5
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 9.2e-62 241.5 330 47.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-60 236.9 330 47.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.3e-59 233.0 287 51.2
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.3e-59 231.9 325 46.2
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.1e-58 230.3 327 45.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.8e-58 229.9 330 44.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.0e-57 228.0 332 44.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-57 227.3 316 45.6
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.0e-57 226.5 316 44.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.0e-57 226.5 334 42.5
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 4.0e-57 226.1 286 50.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.0e-57 226.1 316 44.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 6.8e-57 225.3 284 51.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 8.9e-57 224.9 325 45.5
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.2e-56 224.6 329 44.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.6e-56 223.4 331 44.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.4e-56 222.6 326 43.6
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-55 220.7 215 66.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.7e-55 220.7 330 43.0
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.2e-55 220.3 331 44.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.9e-55 219.2 326 44.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 6.4e-55 218.8 329 43.5
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.1e-54 218.0 324 44.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.4e-54 217.6 328 43.6
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-54 217.2 278 48.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.4e-54 216.9 329 44.1
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.4e-54 215.7 328 42.4
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 7.0e-54 215.3 336 44.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.2e-53 214.5 328 41.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.6e-53 214.2 288 50.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.0e-53 213.8 330 43.6
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.0e-53 213.8 328 43.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 4.6e-53 212.6 276 47.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.0e-53 212.2 330 43.6
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.0e-52 211.5 330 41.5
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-51 208.0 288 48.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.5e-51 206.8 325 41.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.3e-51 205.3 330 43.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 9.5e-51 204.9 291 46.0
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 9.5e-51 204.9 273 46.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.1e-50 203.8 326 41.4
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.8e-50 203.4 331 42.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.6e-50 203.0 324 42.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.6e-50 203.0 332 41.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 8.0e-50 201.8 331 41.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.1e-49 201.4 325 41.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.3e-49 200.3 383 37.1
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 3.1e-49 199.9 324 42.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.5e-48 197.6 329 40.1
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 3.4e-48 196.4 328 41.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.4e-48 196.1 328 40.9
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 9.8e-48 194.9 337 42.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.7e-47 194.1 328 40.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.7e-47 194.1 326 41.1
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 2.2e-47 193.7 331 41.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 6.4e-47 192.2 329 40.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.4e-46 191.0 338 40.5
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-46 191.0 329 40.1
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.4e-46 190.3 327 39.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.0e-46 188.7 329 39.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.2e-45 188.0 334 38.3
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-45 187.2 334 39.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.0e-44 184.9 323 39.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.3e-44 183.7 328 39.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.0e-44 183.3 317 41.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.0e-44 183.3 292 41.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.5e-43 180.3 311 40.5
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.3e-43 179.9 330 39.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 7.3e-43 178.7 316 40.2
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.5e-43 178.3 325 40.0
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.5e-43 178.3 325 40.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 4.7e-42 176.0 332 40.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.7e-42 176.0 284 40.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 6.2e-42 175.6 389 35.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.0e-41 172.9 325 39.1
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.8e-41 172.2 400 34.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.9e-41 171.8 279 39.4
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 5.8e-40 169.1 320 38.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.9e-40 168.3 328 38.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 9.9e-40 168.3 330 39.4
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.2e-39 167.2 255 40.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.9e-39 166.8 328 37.8
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.7e-39 166.4 282 41.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 4.9e-39 166.0 326 38.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.1e-38 164.9 314 37.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 3.2e-38 163.3 328 38.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 2.7e-37 160.2 327 37.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.6e-37 159.5 324 37.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.0e-37 159.1 320 36.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-36 157.9 139 60.4
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-36 157.9 389 33.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 3.0e-36 156.8 279 39.4
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.0e-36 156.8 332 35.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.9e-36 156.4 311 36.0
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.9e-36 156.4 364 34.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.6e-35 152.5 315 36.8
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.2e-34 151.4 351 35.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.1e-34 150.6 144 56.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 3.6e-34 149.8 274 40.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.6e-34 149.8 322 37.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.8e-33 147.5 342 33.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.1e-33 146.7 337 34.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.2e-32 144.8 339 36.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.5e-32 144.4 331 35.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.6e-32 143.7 331 35.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.8e-32 142.5 275 38.5
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 9.9e-32 141.7 139 51.8
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.2e-31 140.6 233 41.2
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.4e-30 137.9 276 34.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.4e-30 137.1 392 33.2
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.6e-29 134.4 159 47.8
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.6e-29 134.4 339 34.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.6e-29 132.9 138 51.4
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.7e-28 131.0 144 52.1
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.1e-27 128.3 319 33.9
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.1e-27 128.3 284 35.6
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 4.3e-27 126.3 143 46.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 7.3e-27 125.6 141 49.6
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-26 124.0 181 40.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.6e-24 117.1 145 47.6
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.4e-24 116.7 297 33.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.4e-24 116.7 145 47.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.8e-23 113.2 391 30.2
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 7.1e-22 109.0 141 46.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 7.1e-22 109.0 141 46.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 8.7e-20 102.1 315 32.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-18 97.8 120 48.3
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 6.2e-18 95.9 247 35.2
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.8e-17 94.4 269 28.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.4e-17 94.0 202 31.7
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.5e-16 91.3 77 55.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.7e-15 87.8 236 32.6
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.7e-15 87.8 268 27.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 8.4e-15 85.5 173 37.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.2e-14 83.2 236 30.9
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.2e-14 83.2 303 27.1
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.6e-13 79.7 145 38.6
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.9e-13 79.0 48 70.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.5e-11 73.9 178 32.6
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 6.9e-09 65.9 57 56.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.6e-08 63.9 79 45.6
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.5e-08 63.2 172 31.4
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 6.4e-07 59.3 161 29.8
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.9e-06 57.8 117 36.8
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 4.2e-06 56.6 128 37.5
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 5.5e-06 56.2 262 25.6
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 7.1e-06 55.8 128 36.7
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 7.1e-06 55.8 135 35.6
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 9.3e-06 55.5 135 33.3


User provided reference genes

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