Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 4.7e-46 187.6 99 100.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 7.0e-42 173.7 99 93.9
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.0e-40 169.9 95 94.7
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 4.9e-35 151.0 81 96.3
C06p11800 Brassica napus HOM05D004641 ORTHO05D022007 1.8e-26 122.5 68 91.2
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.8e-22 108.6 59 94.9
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.6e-14 82.8 61 70.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 4.7e-14 81.3 61 70.5
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 6.2e-14 80.9 61 68.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 6.2e-14 80.9 61 68.9
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 6.2e-14 80.9 61 68.9
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-13 80.1 61 68.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.2e-13 77.8 61 67.2
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 6.8e-13 77.4 61 67.2
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 8.9e-13 77.0 61 65.6
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 8.9e-13 77.0 61 65.6
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 8.9e-13 77.0 61 65.6
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.2e-12 76.6 61 65.6
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.2e-12 76.6 61 65.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-12 76.6 61 65.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.4e-12 75.1 60 66.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.4e-12 74.7 61 63.9
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.4e-12 74.7 61 63.9
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.9e-10 69.3 61 59.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 2.1e-09 65.9 61 55.7
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.1e-09 65.9 61 55.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.1e-09 65.9 61 54.1
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.5e-09 65.1 61 55.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.3e-08 63.2 61 52.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.3e-08 62.4 63 55.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.6e-08 60.8 61 54.1
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 8.6e-08 60.5 61 52.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.5e-07 59.7 61 55.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.5e-07 59.7 60 55.0
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-07 59.3 60 53.3
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.5e-07 58.9 61 52.5
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.3e-07 58.5 61 54.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.3e-07 58.5 61 50.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 3.3e-07 58.5 61 52.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 3.3e-07 58.5 63 49.2
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.3e-07 58.5 61 50.8
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.3e-07 58.5 61 52.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 54.1
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 49.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 54.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 54.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 54.1
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.3e-07 58.2 61 54.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-07 57.8 63 49.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 7.3e-07 57.4 60 51.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 7.3e-07 57.4 63 50.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 9.5e-07 57.0 61 49.2
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 9.5e-07 57.0 61 50.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.6e-06 56.2 61 50.8
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.6e-06 56.2 61 49.2
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.6e-06 56.2 61 47.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.6e-06 56.2 61 49.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.1e-06 55.8 61 52.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.1e-06 55.8 55 54.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.1e-06 55.8 59 50.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 2.8e-06 55.5 61 50.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.8e-06 55.5 61 50.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.8e-06 55.5 61 47.5
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 47.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 52.5
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 52.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.6e-06 55.1 60 48.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 50.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 49.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 3.6e-06 55.1 61 49.2
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.7e-06 54.7 61 47.5
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.7e-06 54.7 61 49.2
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.7e-06 54.7 61 50.8
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.7e-06 54.7 61 49.2
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 6.2e-06 54.3 61 45.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 6.2e-06 54.3 60 50.0
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.1e-06 53.9 61 47.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.1e-06 53.9 61 47.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 8.1e-06 53.9 61 47.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.1e-06 53.9 61 47.5
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 8.1e-06 53.9 61 47.5


User provided reference genes

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