Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-145 519.6 264 100.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.1e-141 505.8 264 98.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 3.9e-124 448.4 280 86.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 3.9e-124 448.4 280 86.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 3.9e-124 448.4 280 86.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.7e-83 311.6 279 65.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.1e-73 278.9 319 54.9
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-72 276.9 305 56.7
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.9e-65 253.4 303 55.1
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.4e-65 251.9 326 50.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.0e-65 251.5 325 52.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-63 247.7 314 53.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.0e-63 247.7 314 53.8
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.5e-62 243.8 301 51.8
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-59 233.8 347 48.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-59 233.8 347 48.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.8e-59 231.9 353 46.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 6.0e-56 221.9 347 47.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 9.5e-54 214.5 361 42.4
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 9.2e-49 198.0 296 45.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.9e-44 181.4 373 39.4
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.6e-35 153.3 249 42.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.9e-34 149.1 165 52.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.4e-33 145.6 279 36.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 9.3e-33 144.8 193 45.1
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.6e-32 144.1 227 40.5
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.6e-32 144.1 164 51.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.1e-32 143.7 159 49.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.1e-32 143.7 161 49.7
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.5e-32 142.9 247 38.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.0e-31 141.4 311 32.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.0e-31 141.4 160 50.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.7e-31 140.6 151 53.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.7e-31 140.6 321 34.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.0e-31 139.8 250 39.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.9e-31 139.4 332 32.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.9e-31 139.4 116 59.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.9e-31 139.4 158 51.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.1e-31 139.0 276 36.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 5.1e-31 139.0 160 46.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.1e-31 139.0 112 60.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.1e-31 139.0 217 43.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.6e-31 138.7 225 40.4
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 8.7e-31 138.3 231 41.1
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 8.7e-31 138.3 152 50.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-30 137.9 155 50.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.1e-30 137.9 131 53.4
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.5e-30 137.5 213 40.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.9e-30 137.1 174 46.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.9e-30 137.1 226 41.6
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.5e-30 136.7 262 37.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.3e-30 136.3 204 42.6
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.3e-30 136.3 204 42.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.3e-30 136.3 295 33.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 3.3e-30 136.3 226 41.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.3e-30 136.0 243 40.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.6e-30 135.6 152 50.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 7.4e-30 135.2 157 47.8
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 9.6e-30 134.8 313 34.5
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 9.6e-30 134.8 257 40.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-29 134.4 142 48.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-29 134.4 110 55.5
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-29 134.4 169 45.0
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.6e-29 134.0 286 35.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.1e-29 133.7 164 48.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.6e-29 132.9 142 47.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.6e-29 132.9 376 30.3
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 4.8e-29 132.5 165 44.8
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.8e-29 132.5 263 38.0
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.8e-29 132.5 152 46.1
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 6.2e-29 132.1 195 44.1
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.2e-29 132.1 153 45.1
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 6.2e-29 132.1 281 33.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.1e-28 131.3 178 45.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-28 131.3 137 51.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-28 131.0 280 33.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.4e-28 131.0 307 32.9
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.4e-28 131.0 110 55.5
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.4e-28 131.0 226 40.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.4e-28 131.0 159 48.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-28 130.6 170 47.6
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-28 130.2 134 51.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.4e-28 130.2 144 47.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.1e-28 129.8 271 35.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.1e-28 129.8 160 46.2
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.1e-28 129.8 160 46.2
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.3e-28 129.0 167 43.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.0e-28 128.3 160 45.6
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.2e-27 127.9 174 42.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.5e-27 127.5 181 43.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.5e-27 127.5 143 49.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.4e-27 126.3 156 47.4
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.5e-27 125.9 153 45.8
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 5.8e-27 125.6 303 36.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 5.8e-27 125.6 128 50.8
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 7.6e-27 125.2 174 44.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-26 124.0 145 49.7
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-26 123.6 111 53.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.9e-26 123.2 111 53.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 2.9e-26 123.2 226 37.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.9e-26 123.2 153 43.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 6.4e-26 122.1 294 33.7
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.4e-26 121.7 229 38.9
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.1e-25 121.3 136 50.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.9e-25 120.6 293 34.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.4e-25 120.2 271 33.9
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.4e-25 120.2 176 40.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.4e-25 120.2 180 43.3
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.2e-25 119.4 275 34.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.7e-24 116.7 278 32.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.7e-24 116.7 259 32.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 3.5e-24 116.3 156 46.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 4.6e-24 115.9 156 46.2
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.6e-24 115.9 292 32.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.0e-24 115.5 177 35.6
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 7.9e-24 115.2 179 40.8
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.0e-23 114.8 291 32.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.0e-23 114.8 233 36.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.3e-23 114.4 274 33.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-23 114.4 164 43.9
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.8e-23 114.0 285 32.6
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.8e-23 114.0 295 32.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.8e-23 114.0 359 29.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.7e-23 112.1 279 32.3
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 8.7e-23 111.7 87 58.6
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-22 110.9 170 37.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-22 110.9 286 32.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.5e-22 110.2 286 32.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 5.6e-22 109.0 286 33.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.6e-21 107.5 266 32.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-21 106.7 213 37.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 8.1e-21 105.1 106 52.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.4e-20 104.4 269 33.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.8e-20 104.0 296 30.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-20 103.6 103 51.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-20 103.6 103 51.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 6.9e-20 102.1 161 41.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 6.9e-20 102.1 113 49.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.4e-19 99.8 268 32.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.5e-19 99.4 273 32.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.5e-19 99.4 273 32.6
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 4.5e-19 99.4 136 42.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 7.6e-19 98.6 273 32.6
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.3e-18 97.8 271 33.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.2e-18 97.1 270 32.6
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.1e-17 94.7 156 35.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-17 94.0 103 48.5
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.2e-17 93.2 105 38.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.2e-17 92.8 276 28.3
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-16 91.3 113 42.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.1e-16 90.5 73 64.4
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.1e-16 90.5 104 44.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.7e-16 90.1 154 40.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-15 87.8 132 42.4
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.1e-15 85.9 73 61.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 4.3e-14 82.8 224 28.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 7.4e-14 82.0 108 43.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.4e-14 82.0 128 36.7
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.3e-13 81.3 226 26.5
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.8e-13 79.3 199 34.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.4e-12 77.8 179 32.4
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.4e-12 77.8 179 32.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.1e-12 76.6 196 32.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-11 73.6 142 34.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.3e-10 71.2 262 29.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-10 70.5 260 27.3
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.9e-10 70.1 293 29.4
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 6.1e-08 62.4 127 42.5
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.7e-07 58.9 43 72.1
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 9.7e-06 55.1 181 26.0


User provided reference genes

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