Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 4.4e-98 361.3 184 100.0
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.9e-93 345.9 213 86.4
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.5e-90 334.0 184 91.3
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 9.8e-90 333.6 184 91.8
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-89 333.2 184 91.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.3e-89 333.2 184 91.3
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.9e-89 332.0 184 90.8
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.9e-89 331.3 185 91.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.4e-89 330.9 184 91.3
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-88 330.1 184 90.2
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-88 330.1 184 90.2
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.2e-87 326.6 184 89.7
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.3e-86 322.4 173 94.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.3e-86 322.4 184 90.2
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 9.8e-82 307.0 202 81.2
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.7e-79 298.9 164 92.7
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.5e-79 298.5 211 74.9
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 8.1e-76 287.3 159 91.2
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 5.8e-74 281.2 181 76.2
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.2e-72 275.4 184 73.9
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 3.2e-72 275.4 184 73.9
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 7.1e-72 274.2 179 74.9
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 7.1e-72 274.2 179 74.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 2.1e-71 272.7 184 73.4
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.0e-70 270.4 169 78.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.3e-70 270.0 184 73.9
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.9e-69 266.2 158 88.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 9.6e-69 263.8 169 78.1
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.4e-67 259.2 190 71.6
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 5.2e-67 258.1 170 74.7
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.7e-63 245.7 182 69.8
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 6.0e-63 244.6 181 69.1
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.0e-62 243.8 181 69.1
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.3e-62 243.4 175 70.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.3e-62 243.4 171 70.2
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.3e-62 242.7 175 69.1
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.1e-61 240.4 181 68.0
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.5e-61 240.0 170 69.4
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.5e-61 240.0 169 71.0
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.9e-61 239.6 174 70.1
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.3e-61 238.8 171 67.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.3e-61 238.8 181 65.7
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 4.3e-61 238.4 174 66.7
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 5.6e-61 238.0 175 69.7
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 5.6e-61 238.0 179 65.4
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 7.3e-61 237.7 176 69.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 9.6e-61 237.3 171 70.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 9.6e-61 237.3 171 69.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.3e-60 236.9 173 69.9
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.8e-60 235.7 172 70.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.8e-60 235.7 169 69.2
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.8e-60 235.7 181 68.0
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 4.8e-60 235.0 170 68.2
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.2e-60 234.6 172 69.2
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 8.1e-60 234.2 172 67.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 8.1e-60 234.2 174 70.1
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.1e-59 233.8 181 64.1
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.1e-59 233.8 177 66.1
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.1e-59 233.8 165 70.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.4e-59 232.6 174 66.1
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 3.1e-59 232.3 164 71.3
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 4.0e-59 231.9 184 63.6
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 4.0e-59 231.9 161 72.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.0e-59 231.9 178 65.2
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 5.3e-59 231.5 171 68.4
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.3e-59 231.5 178 65.2
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.9e-59 231.1 206 62.1
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 9.0e-59 230.7 181 64.6
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 9.0e-59 230.7 182 65.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 9.0e-59 230.7 178 65.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.2e-58 230.3 171 67.3
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.2e-58 230.3 169 69.2
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 2.6e-58 229.2 174 64.9
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 2.6e-58 229.2 181 62.4
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.4e-58 228.8 164 68.9
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.4e-58 228.4 177 66.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 4.4e-58 228.4 157 71.3
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.4e-58 228.4 179 64.8
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.4e-58 228.4 173 67.1
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 5.8e-58 228.0 166 68.7
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 7.6e-58 227.6 194 61.3
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 9.9e-58 227.3 177 66.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 9.9e-58 227.3 175 66.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.2e-57 226.1 177 65.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.2e-57 226.1 166 68.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.9e-57 225.7 174 64.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.9e-57 225.7 174 64.4
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.9e-57 225.7 174 64.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.9e-57 225.7 174 64.9
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 2.9e-57 225.7 163 68.7
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.8e-57 225.3 172 67.4
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.9e-57 224.9 181 64.1
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 4.9e-57 224.9 164 69.5
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.4e-57 224.6 174 66.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 8.4e-57 224.2 169 66.9
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.1e-56 223.8 174 64.4
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.4e-56 223.4 159 70.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.4e-56 223.4 172 66.9
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.4e-56 223.4 150 74.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.9e-56 223.0 160 69.4
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 5.4e-56 221.5 166 66.3
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 5.4e-56 221.5 166 65.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 9.3e-56 220.7 130 83.1
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.3e-56 220.7 176 60.8
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.2e-55 220.3 160 68.1
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.2e-55 220.3 162 64.8
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.6e-55 218.4 171 65.5
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 4.6e-55 218.4 166 65.7
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.0e-54 217.2 172 63.4
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.9e-54 215.3 175 62.3
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 5.1e-54 214.9 174 60.9
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.1e-53 213.8 130 81.5
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.5e-53 213.4 167 67.7
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.3e-53 211.8 130 80.0
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 4.3e-53 211.8 175 61.1
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.3e-53 211.8 185 62.2
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.3e-52 210.3 220 54.1
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.6e-52 209.9 175 62.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.6e-52 209.9 168 60.7
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 8.1e-52 207.6 157 65.0
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.1e-51 207.2 180 60.6
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.4e-51 206.1 181 56.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.4e-51 206.1 158 65.8
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 2.4e-51 206.1 160 61.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.0e-51 205.3 145 70.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.3e-51 204.9 157 68.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 6.9e-51 204.5 176 60.8
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.2e-50 203.8 130 79.2
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.8e-50 201.4 154 64.9
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 5.8e-50 201.4 154 64.9
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.6e-50 201.1 154 64.9
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.2e-48 195.3 122 79.5
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 4.2e-48 195.3 157 61.1
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 4.6e-47 191.8 129 74.4
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 6.0e-47 191.4 167 56.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 5.1e-46 188.3 130 71.5
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 8.7e-46 187.6 121 73.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 3.3e-45 185.7 96 97.9
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.4e-43 179.5 119 75.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.6e-42 176.0 156 56.4
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.8e-41 172.2 158 53.8
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.9e-41 171.8 143 62.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.6e-39 166.8 121 66.1
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.1e-39 166.4 160 50.0
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.8e-38 163.3 135 64.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.0e-38 162.5 122 67.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 5.1e-38 161.8 136 60.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.1e-37 160.6 150 53.3
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 5.7e-37 158.3 130 63.1
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.6e-36 156.8 130 58.5
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.4e-35 153.7 144 52.1
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.1e-32 144.1 165 45.5
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.5e-31 139.0 161 46.6
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.7e-28 129.0 116 57.8
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.9e-24 116.7 95 57.9
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.8e-22 110.2 149 45.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.7e-20 102.4 108 53.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-16 90.1 86 55.8
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-15 87.4 94 44.7
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.5e-09 65.1 46 60.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.9e-08 63.5 44 68.2
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.6e-07 60.5 46 67.4
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.6e-07 60.5 46 67.4
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 2.7e-07 59.7 46 67.4
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 8.0e-07 58.2 47 63.8


User provided reference genes

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