Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.5e-30 135.6 69 100.0
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 2.4e-20 101.7 58 87.9
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 4.0e-20 100.9 58 84.5
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 4.0e-20 100.9 58 84.5
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.2e-20 100.5 58 82.8
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 8.9e-20 99.8 58 82.8
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 8.9e-20 99.8 58 82.8
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 3.4e-19 97.8 58 84.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.8e-19 97.1 58 82.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.7e-18 95.5 58 81.0
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 3.8e-18 94.4 58 81.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 4.9e-18 94.0 58 79.3
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 8.4e-18 93.2 58 79.3
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.9e-17 92.0 58 77.6
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.2e-17 90.9 58 75.9
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.6e-16 87.4 58 72.4
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-14 82.4 58 67.2
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-14 82.4 58 67.2
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 2.5e-14 81.6 58 65.5
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.5e-14 81.6 58 65.5
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.3e-14 81.3 58 72.4
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 4.3e-14 80.9 58 69.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.3e-14 80.9 58 65.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.6e-14 79.7 58 62.1
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.3e-13 79.3 58 70.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-13 79.0 58 62.1
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-13 79.0 58 62.1
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.6e-13 79.0 58 65.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 2.1e-13 78.6 58 70.7
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.1e-13 78.6 58 63.8
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.8e-13 78.2 58 65.5
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.8e-13 78.2 58 72.4
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 3.6e-13 77.8 58 67.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 4.8e-13 77.4 58 69.0
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.2e-13 77.0 58 63.8
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-12 76.3 60 63.3
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-12 75.9 58 62.1
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.8e-12 75.5 58 62.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.8e-12 75.5 58 67.2
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.8e-12 75.5 58 63.8
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.8e-12 75.5 58 63.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.4e-12 75.1 58 62.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.4e-12 75.1 58 63.8
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 65.5
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 65.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 65.5
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 65.5
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 65.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.1e-12 74.7 58 69.0
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.0e-12 74.3 58 62.1
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 4.0e-12 74.3 58 63.8
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.3e-12 73.9 58 65.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 6.9e-12 73.6 58 63.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 6.9e-12 73.6 58 67.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 6.9e-12 73.6 58 65.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 9.0e-12 73.2 58 58.6
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-11 72.8 58 63.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.2e-11 72.8 58 63.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.2e-11 72.8 58 60.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 2.0e-11 72.0 58 63.8
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.0e-11 72.0 58 62.1
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.6e-11 71.6 58 58.6
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.6e-11 71.6 58 58.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.6e-11 71.6 58 58.6
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.6e-11 71.6 58 67.2
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-11 71.2 58 62.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 3.4e-11 71.2 58 60.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 4.5e-11 70.9 58 62.1
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.5e-11 70.9 58 58.6
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 4.5e-11 70.9 58 60.3
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 4.5e-11 70.9 58 62.1
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 5.8e-11 70.5 58 62.1
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.8e-11 70.5 58 58.6
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.8e-11 70.5 58 58.6
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.8e-11 70.5 58 62.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 7.6e-11 70.1 58 60.3
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 7.6e-11 70.1 58 60.3
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 7.6e-11 70.1 58 60.3
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.6e-11 70.1 58 60.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 56.9
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 56.9
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 58.6
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 60.3
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 65.5
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 9.9e-11 69.7 58 56.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 1.3e-10 69.3 58 58.6
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.3e-10 69.3 58 58.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.3e-10 69.3 58 58.6
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.7e-10 68.9 58 58.6
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.7e-10 68.9 58 58.6
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.7e-10 68.9 58 58.6
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.2e-10 68.6 58 60.3
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-10 68.6 58 58.6
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 4.9e-10 67.4 58 58.6
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.9e-10 67.4 58 58.6
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 4.9e-10 67.4 58 56.9
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 4.9e-10 67.4 58 60.3
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 6.4e-10 67.0 58 56.9
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 6.4e-10 67.0 58 58.6
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.4e-10 67.0 58 56.9
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 8.4e-10 66.6 58 56.9
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-09 66.2 58 55.2
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.1e-09 66.2 58 56.9
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.9e-09 65.5 58 55.2
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.9e-09 65.5 58 55.2
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.9e-09 65.5 58 56.9
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 3.2e-09 64.7 58 53.4
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.2e-09 64.7 58 58.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 3.2e-09 64.7 58 53.4
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 5.4e-09 63.9 58 51.7
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 5.4e-09 63.9 58 53.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 7.1e-09 63.5 58 53.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 7.1e-09 63.5 58 55.2
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 9.3e-09 63.2 58 56.9
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.6e-08 62.4 58 51.7
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.5e-06 55.1 58 50.0
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 3.3e-06 54.7 58 50.0


User provided reference genes

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